Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47500 1051 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 1042 / 0 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G09170 925 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G44730 688 / 0 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT3G10310 531 / 2e-173 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G63640 515 / 2e-165 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT1G73860 506 / 9e-163 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 496 / 8e-158 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G41310 488 / 2e-156 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT2G22610 351 / 3e-104 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G011500 [exp] 1780 / 0 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.002G201000 [exp] 1176 / 0 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.014G125700 [exp] 1166 / 0 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G467600 [exp] 750 / 0 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 749 / 0 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.001G104000 [exp] 536 / 2e-173 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 516 / 2e-165 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 512 / 1e-164 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.012G056700 [exp] 491 / 2e-156 AT1G63640 857 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029865 [exp] 1164 / 0 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10009851 [exp] 1049 / 0 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10015212 [exp] 978 / 0 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10032897 [exp] 726 / 0 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10020682 [exp] 714 / 0 AT1G09170 843 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10001306 [exp] 648 / 0 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10032264 [exp] 505 / 8e-161 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10024628 [exp] 500 / 1e-158 AT1G63640 980 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10018049 [exp] 491 / 3e-157 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10042045 [exp] 486 / 2e-155 AT3G10310 863 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0188 [poplar] [flax] CH PF00307 [poplar] [flax] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Potri.005G021100.1 pacid=42802344 polypeptide=Potri.005G021100.1.p locus=Potri.005G021100 ID=Potri.005G021100.1.v4.1 annot-version=v4.1 ATGGAAACAGAGCAGCAGCAACAAGTTTGGCCTTTCTCTGCTGCTTCTGTTGTAGAGGACATGATTCAAGAAAATATTGGAGCTCGACCAAGAGATGTTG ATTTGGTGGCTTCAAGAAAAGCTGAAGAAGCTTCCTTGAGAAGGTATGAAGCAGCTGGGTGGCTTCGAAAGACAGCAGGAGTTGTTGGGGGTAAAGATTT GCCAGCTGAGCCCTCTGAAGAAGAATTCAGGTTTGGATTGCGAAGTGGGATAATTTTGTGTACAGTCCTTAACAAGATTCAACCTGGAGCAGTTCCAAAG GTAGTGGAAGGTCCTGGTGATTCTGTTGAAGTTCCTGATGGGGCTGCTTTATCAGCATTTCAGTACTTCGAAAACGTGAGAAACTTCCTGGTAGCTGTTG AGGAAATGGGGATTCCAAACTTTGAAGCTTCTGATTTGGAACAGGGAGGAAAATCTGCTAGGGTTGTGAACTGTATTTTAGCTCTTAAGTCATATAATGA ATGGAAACAAAGTGGTGGAATTGGGACATGGAAATATGGAGGAAACTTGAAACCCTCATCTTGTGGGGGTGGGAAACTCTTCATGCGAAAAAATTCCGAG CCTTTCATGAGTTCCTTTTCTCGGATGAGCAGTGGTGATCCATCTTCATTTGATGAACAATTCCGTGACCTAAGCGAAGCTGGCGCCTCTCGTTCTTTGA AGATGCTTGTCCGTACAGTTCTTTCAAACAGGAAGCAAGAAGAAATACCAAATATTGTAGAGTCTATGCTAAATAAAGTCATGGAGGAGTTCGAGCGTCG GTTGGTGAGCCAGAATGAGCAGATGAAAACAACAGCAAAAGATATGGAAGAATCTAGCCCTGACATGCCTCTTTCAAGCTCTAGCGATACAAGGATGGAA GAAGACTCTTCCACACAAATCAATACAGAGGAATGGTGCACTTATAAGGGCAATCCTCATGAGGAATCAAATGACCAGCTTTTGAAACAGCAAGTGTTGG TTGATCGACAACAAAAAGACATTAAGGAATTGAAACTTACTCTTCATGCTACGAAAGAAGGAATGCATTTTTTGCAGATGAAATATCTGGAGGAGTTCAA CAATTTAGGTAAGCACTTGTATGGTCTAGCTCATGCTGCTTCAGGCTACCAGAGAGTCCTAGAGGAGAACCGCAAGTTATACAATCAAGTGCAGGACCTG AAAGGAAATATTAGAGTATATTGTCGAGTAAGACCCTTCTTGACTGGGCAACCAAATCGTTTTGGTACGGTGGATCGCATAGATGAAGGGAGCATTTCAA TTATCACCCCTTCGAAATATGGCAAAGAGGGACGCAAATCATTTAGCTTCAACAAGGTTTTTGGTCCTTTGGCAACTCAAGGGGAGGTTTTTGCAGACAC CCAGCCTTTGATCCGGTCTGTTCTTGATGGGTACAATGTATGTATATTTGCATATGGCCAAACAGGATCCGGGAAGACCTATACTATGACTGGTCCCGAG GATCTTACAGAGGAAAGCCTAGGTGTAAACTACAGGGCATTGAGTGATCTATTTCTCCTCTCAGATCAAAGAAAGGAAGTTATTTGCTACGATATCTCTG TCCAAATGCTTGAAATTTACAACGAGCAAGTGAGGGATCTCCTTGCAACTGATGGTCTCAACAGAAGATTAGATATTCGAAACAGTTCTCAGAATGGAAT AAACGTACCAGATGCAAGTCTTGTGTCTGTATCATCACCATCTGATGTCTTAAATTTGATGAACATCGGGCAAAGGAATCGTGCAGTTAGCGCTACAGCA ATGAATGACCGGAGCAGTCGCTCCCACAGCTGCCTGACAGTTCATGTTCAAGGGAGAGACCTGACATCTGGAGCAGTACTCCGTGGTTCGATGCATCTAG TTGACCTGGCAGGAAGTGAACGGGTTGACAAATCTGAGGTGACAGGAGATAGATTAAAGGAAGCACAGCATATCAATAGATCTCTTTCTGCTTTGGGAGA TGTGATTGCCTCTCTTGCTCAAAAAAACTCACATGTTCCCTACAGGAACAGCAAACTCACTCAACTACTCCAGGATTCACTTGGAGGGCAGGCTAAGACA CTCATGTTTGTCCACATAAGTCCTGAGGCTGATGCTCTTGGAGAAACAATTAGCACACTTAAATTCGCTGAACGGGTTGCCACTGTTGAGCTTGGCGCTG CACGAGTTAATAAAGATAGTTCAGAGGTGAAGGAGCTGAAAGAGCAGATGGCTAATCTCAAAGCAGCCTTAGCAATGAAGGAAGGAGAGTCAGAAAATTC ACAGCATTCTCGATCCAGCACCCCAGAAAGACTTAAAAGGAAGCCTGGTTTGCCCTTTTCTTATAGTTGGCATAGTGCAAGTAGCATCACCAGTGGTCAT AGGCAGATGGAGGATGGTAATGCAGAGGTTAGGAACCACTATTCGTCTATTCCAAGAAGGCGAAGCTTGGATCCCCAGGACTTGATCATGTATTCACCTC CTTGGTCATCTGCTGGCAGTCCTGCATTGAGTGGAAAGGAGGATGATAAAGAATCGGTCTTTGGTGACTGGGTTGACAAGGTCATGGTGAATAGGCTTGA CGCTGCAAGAAGAGATGAAAATCCTGCAGGGCAATGGGAAGTAGACAGCAGACAATTGCCTGGCATGTTTTATCAGGTTTATGCTCGAGAACCTTCAAAG ATTTATCCAGAACAACCCTACAAATCTCCACAGAACACAAAGGACAACCAAGAGTATGATGCTCAGAGGAGTAGGTTTGAAATGGCATCCACTGATGACT CTGATGAACTTGAGGCTGCAACAAGTGATTCTTCTGAGCCAGATTTGCTATGGCAATCTAACATTCCTAGAATGACCAGCCTTCCCAATCCCAATGTGTT GGGATCTAAAACAAAGAAGACTACTAATCCAAGGGGATTCAAGAGCACCGAAACAAGGAGTTTAATTCCATCGCTAATTCCTTCACCGTCAAGGAAACTA CCAAATGGGGTGAGTCCAGGCCTCAACAAACCTGGAAGGCAGCTAGTTTCTGTTGATGGAAAGAGGAAAACTGGGCATGCAAAGTGA
AA sequence Show only first row Show all	>Potri.005G021100.1 pacid=42802344 polypeptide=Potri.005G021100.1.p locus=Potri.005G021100 ID=Potri.005G021100.1.v4.1 annot-version=v4.1 METEQQQQVWPFSAASVVEDMIQENIGARPRDVDLVASRKAEEASLRRYEAAGWLRKTAGVVGGKDLPAEPSEEEFRFGLRSGIILCTVLNKIQPGAVPK VVEGPGDSVEVPDGAALSAFQYFENVRNFLVAVEEMGIPNFEASDLEQGGKSARVVNCILALKSYNEWKQSGGIGTWKYGGNLKPSSCGGGKLFMRKNSE PFMSSFSRMSSGDPSSFDEQFRDLSEAGASRSLKMLVRTVLSNRKQEEIPNIVESMLNKVMEEFERRLVSQNEQMKTTAKDMEESSPDMPLSSSSDTRME EDSSTQINTEEWCTYKGNPHEESNDQLLKQQVLVDRQQKDIKELKLTLHATKEGMHFLQMKYLEEFNNLGKHLYGLAHAASGYQRVLEENRKLYNQVQDL KGNIRVYCRVRPFLTGQPNRFGTVDRIDEGSISIITPSKYGKEGRKSFSFNKVFGPLATQGEVFADTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPE DLTEESLGVNYRALSDLFLLSDQRKEVICYDISVQMLEIYNEQVRDLLATDGLNRRLDIRNSSQNGINVPDASLVSVSSPSDVLNLMNIGQRNRAVSATA MNDRSSRSHSCLTVHVQGRDLTSGAVLRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNSHVPYRNSKLTQLLQDSLGGQAKT LMFVHISPEADALGETISTLKFAERVATVELGAARVNKDSSEVKELKEQMANLKAALAMKEGESENSQHSRSSTPERLKRKPGLPFSYSWHSASSITSGH RQMEDGNAEVRNHYSSIPRRRSLDPQDLIMYSPPWSSAGSPALSGKEDDKESVFGDWVDKVMVNRLDAARRDENPAGQWEVDSRQLPGMFYQVYAREPSK IYPEQPYKSPQNTKDNQEYDAQRSRFEMASTDDSDELEAATSDSSEPDLLWQSNIPRMTSLPNPNVLGSKTKKTTNPRGFKSTETRSLIPSLIPSPSRKL PNGVSPGLNKPGRQLVSVDGKRKTGHAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47500			P-loop nucleoside triphosphate...		Potri.005G021100 [exp]	0	1
AT3G23090			TPX2 (targeting protein for Xk...		Potri.008G162800 [exp]	1.00	0.9562
AT5G47635			Pollen Ole e 1 allergen and ex...		Potri.006G005600 [exp]	2.00	0.9413
AT5G43150			unknown protein		Potri.008G152200 [exp]	3.16	0.9196
AT3G15050		IQD10	IQ-domain 10 (.1)		Potri.001G375700 [exp]	3.46	0.9389
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Potri.016G115300 [exp]	4.00	0.9084
AT1G16290			unknown protein		Potri.008G084100 [exp]	5.19	0.9021
AT3G52790			peptidoglycan-binding LysM dom...		Potri.008G030200 [exp]	5.29	0.9109
AT1G67410			Exostosin family protein (.1)		Potri.008G034500 [exp]	9.16	0.8923
AT4G24990		ATGP4	Ubiquitin family protein (.1)		Potri.012G103100 [exp]	9.16	0.8869
AT3G54360			zinc ion binding (.1)		Potri.001G036400 [exp]	11.66	0.8504

Compare expression of checked genes

Potri.005G021100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.