Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09160 642 / 0 Protein phosphatase 2C family protein (.1.2) AT1G68410 560 / 0 Protein phosphatase 2C family protein (.1.2) AT1G47380 476 / 3e-167 Protein phosphatase 2C family protein (.1) AT2G34740 107 / 6e-26 Protein phosphatase 2C family protein (.1.2) AT1G34750 98 / 7e-23 Protein phosphatase 2C family protein (.1) AT4G28400 96 / 3e-22 Protein phosphatase 2C family protein (.1) AT1G22280 96 / 4e-22 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3) AT1G78200 96 / 5e-22 Protein phosphatase 2C family protein (.1.2) AT1G07160 95 / 4e-21 Protein phosphatase 2C family protein (.1) AT2G40180 94 / 6e-21 ATHPP2C5 phosphatase 2C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G011600 [exp] 778 / 0 AT1G09160 604 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G123600 [exp] 600 / 0 AT1G68410 679 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G121600 [exp] 595 / 0 AT1G68410 635 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.014G031200 [exp] 474 / 3e-166 AT1G47380 717 / 0.0 Protein phosphatase 2C family protein (.1) Potri.002G127300 [exp] 467 / 2e-163 AT1G47380 701 / 0.0 Protein phosphatase 2C family protein (.1) Potri.013G099400 [exp] 103 / 9e-24 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.019G071600 [exp] 100 / 1e-22 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1) Potri.002G097200 [exp] 97 / 2e-22 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.012G002100 [exp] 97 / 3e-22 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020666 [exp] 708 / 0 AT1G09160 662 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10042659 [exp] 493 / 1e-173 AT1G47380 704 / 0.0 Protein phosphatase 2C family protein (.1) Lus10009763 [exp] 493 / 1e-173 AT1G47380 719 / 0.0 Protein phosphatase 2C family protein (.1) Lus10006485 [exp] 488 / 2e-171 AT1G47380 728 / 0.0 Protein phosphatase 2C family protein (.1) Lus10021737 [exp] 484 / 2e-169 AT1G47380 701 / 0.0 Protein phosphatase 2C family protein (.1) Lus10042275 [exp] 99 / 1e-22 AT1G07160 392 / 1e-135 Protein phosphatase 2C family protein (.1) Lus10038455 [exp] 97 / 2e-22 AT2G34740 327 / 1e-112 Protein phosphatase 2C family protein (.1.2) Lus10014926 [exp] 96 / 8e-22 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10018618 [exp] 95 / 1e-21 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10039853 [exp] 94 / 2e-21 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.005G021200.1 pacid=42804165 polypeptide=Potri.005G021200.1.p locus=Potri.005G021200 ID=Potri.005G021200.1.v4.1 annot-version=v4.1 ATGCTGGATCTGTTGACACCTCTTCATGTTTCAACCGACGAAGTATCAAGGATGAGACCTCCTCTCGTTCCACTTGCGACATTGATTGGACGTGAGCTTA GGAACGAGAAGATTGAGAAACCTTACGTGAAGTATGGACAAGCTGCTTTAGCAAAGAAAGGAGAGGATTACTTTCTCATAAAACCCGACTGCCAGAGGGT TGCTGGGGATCTGTCGACATCATTTTCTGTGTTTGCGATCTTTGATGGACATAATGGGATATCAGCTGCTATCTTTGCAAAGGAGCAGTTACTGGATAAT GTCTTGAGTGCAATTCCTCAAGACATCAGTAGGGAAGAGTGGCTTCAAGCGCTTCCTCGAGCACTTGTTGCTGGTTTTGTGAAAACTGACATAGAATTCC AGCAGGGAGGGGAGACTTCCGGGACAACTGTGACATTTGTCATAATCGATGGGTGGACTGTGACTGTTGCTTCTGTGGGGGATTCACGATGCATATTGGA CAGCCAGGGGGGTGTGGTTTCTCTCTTGACAGTTGATCACAGGCTGGAAGAAAATGTAGAAGAGAGGGAACGTGTAACTGCAAGTGGGGGTGAAGTAGGA AGGCTAAATGTTTTTGGGGGCAACGAGGTTGGTCCTCTGCGTTGTTGGCCAGGTGGATTATGTCTTTCTAGGTCAATTGGCGACACGGATGTTGGAGAGT TCATTGTTCCAATACCCCATGTTAAGCAAGTGAAAATTTCAAATTTTGGTGGAAGACTCGTCATCGCTTCTGATGGTATCTGGGATGCTTTATCTTCTGA TATGGCTGCCAAGTCTTGTCGGGGTTTACCTGCAGAGCTTGCTGCAAAGTTGGTTGTTAAGGAGGCATTGAGATCAAGGGGCCTGAAGGACGATACGACT TGCCTTGTTGTTGATATCATCCCATCTGACATTCTTTTCTTACCTCCAATACCCAGGAAGAAGCACAATATGTTCAGTTCGCTTCTTTTTGGAAAGAAAG CTCTGAGCTCTGTGAGCAAATCAACAAATAAGCTTTCTGCTGTTGGTGTGGTGGAGGAACTGTTTGAAGAGGGTTCAGCTGTTCTTGCAGAAAGATTAGG TAAGGATTTCCCCGTGAACACCAACTCTGGGATACACAGATGTGCTGTCTGCCAAGTGGATCAAACCCCAGCTGACGGTTTATCAGTCAACTCGGGCTCT TTCTTCTCACCTGGGTCAAAGCCATGTGAAGGCCCCTTCCTCTGCAGTAACTGTCGGAAAAAGAAAGATGCTATGGAAGGCAAAAGGCCAAGTAGAACCA CAGTGACTGCATAG
AA sequence Show only first row Show all	>Potri.005G021200.1 pacid=42804165 polypeptide=Potri.005G021200.1.p locus=Potri.005G021200 ID=Potri.005G021200.1.v4.1 annot-version=v4.1 MLDLLTPLHVSTDEVSRMRPPLVPLATLIGRELRNEKIEKPYVKYGQAALAKKGEDYFLIKPDCQRVAGDLSTSFSVFAIFDGHNGISAAIFAKEQLLDN VLSAIPQDISREEWLQALPRALVAGFVKTDIEFQQGGETSGTTVTFVIIDGWTVTVASVGDSRCILDSQGGVVSLLTVDHRLEENVEERERVTASGGEVG RLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEFIVPIPHVKQVKISNFGGRLVIASDGIWDALSSDMAAKSCRGLPAELAAKLVVKEALRSRGLKDDTT CLVVDIIPSDILFLPPIPRKKHNMFSSLLFGKKALSSVSKSTNKLSAVGVVEELFEEGSAVLAERLGKDFPVNTNSGIHRCAVCQVDQTPADGLSVNSGS FFSPGSKPCEGPFLCSNCRKKKDAMEGKRPSRTTVTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09160			Protein phosphatase 2C family ...		Potri.005G021200 [exp]	0	1
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.014G124200 [exp]	1.41	0.9213
AT5G01460			LMBR1-like membrane protein (....		Potri.006G100200 [exp]	2.23	0.9232
AT5G04420			Galactose oxidase/kelch repeat...		Potri.010G230300 [exp]	5.74	0.9155
AT4G02600		MLO1, ATMLO1	MILDEW RESISTANCE LOCUS O 1, S...		Potri.007G146900 [exp]	6.78	0.8716
AT4G18060			SH3 domain-containing protein ...		Potri.001G354700 [exp]	8.48	0.8896
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.002G191400 [exp]	15.36	0.9016	ARF1.2
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.007G047900 [exp]	20.19	0.8923
AT5G57330			Galactose mutarotase-like supe...		Potri.001G037700 [exp]	20.49	0.8969
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.002G118000 [exp]	20.66	0.8933
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Potri.018G034100 [exp]	25.45	0.8681	Pt-CYC3.1

Compare expression of checked genes

Potri.005G021200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.