Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02070 130 / 5e-35 Protein kinase family protein (.1) AT3G53840 108 / 2e-27 Protein kinase superfamily protein (.1) AT1G11915 56 / 2e-09 unknown protein AT5G50290 48 / 2e-06 unknown protein AT3G17350 45 / 2e-05 unknown protein AT4G03230 42 / 0.0002 S-locus lectin protein kinase family protein (.1) AT1G10380 40 / 0.0008 Putative membrane lipoprotein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G011700 [exp] 316 / 3e-111 AT5G02070 143 / 9e-40 Protein kinase family protein (.1) Potri.008G059900 [exp] 152 / 5e-43 AT5G02070 628 / 0.0 Protein kinase family protein (.1) Potri.006G118500 [exp] 124 / 5e-33 AT5G02070 577 / 0.0 Protein kinase family protein (.1) Potri.006G090200 [exp] 122 / 3e-32 AT5G02070 783 / 0.0 Protein kinase family protein (.1) Potri.010G158500 [exp] 64 / 2e-12 AT1G10380 164 / 1e-48 Putative membrane lipoprotein (.1) Potri.008G095900 [exp] 63 / 8e-12 AT1G10380 158 / 2e-46 Putative membrane lipoprotein (.1) Potri.011G007900 [exp] 56 / 3e-09 AT1G11915 379 / 6e-132 unknown protein Potri.013G150800 [exp] 53 / 3e-08 AT4G03230 1206 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.007G094800 [exp] 50 / 2e-07 AT1G10380 125 / 1e-33 Putative membrane lipoprotein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020667 [exp] 277 / 2e-95 AT5G02070 150 / 5e-42 Protein kinase family protein (.1) Lus10029876 [exp] 264 / 1e-81 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10014387 [exp] 131 / 2e-35 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10036906 [exp] 54 / 9e-09 AT1G10380 129 / 4e-36 Putative membrane lipoprotein (.1) Lus10037078 [exp] 54 / 2e-08 AT1G10380 170 / 6e-50 Putative membrane lipoprotein (.1) Lus10001236 [exp] 47 / 4e-06 AT5G50290 368 / 2e-128 unknown protein Lus10042105 [exp] 46 / 5e-06 AT5G50290 366 / 9e-128 unknown protein Lus10036687 [exp] 45 / 1e-05 AT1G10380 316 / 2e-108 Putative membrane lipoprotein (.1) Lus10037235 [exp] 44 / 5e-05 AT1G10380 318 / 5e-109 Putative membrane lipoprotein (.1) Lus10023362 [exp] 41 / 0.0003 AT1G11915 360 / 2e-124 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.005G021300.1 pacid=42805581 polypeptide=Potri.005G021300.1.p locus=Potri.005G021300 ID=Potri.005G021300.1.v4.1 annot-version=v4.1 ATGATGTTCGTGATAATCGTTTTGCTCACTTTACTATCCCATGCACCAGCCCTTGATGTTTGCCCTAAATGTGGCAACATGGAAGTCCCTTACCCACTTA GCACAAGTGATAATTGTGGAAACCCTAGGTACAGAATCTATTGCAACAGTGGTGCTCTAGAGTTCTTGTCAGCTCAAGGGTTTTACTACAGGATCCTTAG CATCAACCCTAGTGTTCGTAAGCTTGTCATTAGCCCTCCCCTAATAGTGAAGAACACATGTTGTTCCTCTGATCTTTCCCTTGGAGGATTAAGTCTCAAC GAAAACTTGTCGTTCAACATATCCACTCATAACACTGTTATGTTATTCAACTGTTCTGATAACATCCTATTGTCACCGTTGAACTGTTCATCGACCAGCT TTTGTAGGCAGTATGAGGAGGTTGGAGAGGGAAGTGGATGCAAAGGTACTCTTTGTTGCCACTTTTTGAAAGATACAGCAATGACCTCACATAGGATTAG GGTCAGGGCTGGAGGGTGCACTGCTTATACTTCTGTTGTGGACATCAAGCCTGGTGATCCCATTGATAGATGGAACTACGGAATTGAGCTGCAATGGCTG CCTCCACTCTAG
AA sequence Show only first row Show all	>Potri.005G021300.1 pacid=42805581 polypeptide=Potri.005G021300.1.p locus=Potri.005G021300 ID=Potri.005G021300.1.v4.1 annot-version=v4.1 MMFVIIVLLTLLSHAPALDVCPKCGNMEVPYPLSTSDNCGNPRYRIYCNSGALEFLSAQGFYYRILSINPSVRKLVISPPLIVKNTCCSSDLSLGGLSLN ENLSFNISTHNTVMLFNCSDNILLSPLNCSSTSFCRQYEEVGEGSGCKGTLCCHFLKDTAMTSHRIRVRAGGCTAYTSVVDIKPGDPIDRWNYGIELQWL PPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02070			Protein kinase family protein ...		Potri.005G021300 [exp]	0	1
AT2G46150			Late embryogenesis abundant (L...		Potri.002G165100 [exp]	1.00	0.9729
AT3G24310	MYB	MYB305, ATMYB71	MYB DOMAIN PROTEIN 71, myb dom...		Potri.008G173400 [exp]	2.00	0.9578	Pt-MYB305.1
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Potri.017G099500 [exp]	3.46	0.9475
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.011G040300 [exp]	5.65	0.9468
AT2G24130			Leucine-rich receptor-like pro...		Potri.006G181200 [exp]	6.48	0.9354
AT1G05450			Bifunctional inhibitor/lipid-t...		Potri.010G085200 [exp]	7.48	0.9307
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Potri.014G132600 [exp]	7.93	0.9262
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.010G085400 [exp]	8.00	0.9281
AT1G56600		ATGOLS2	galactinol synthase 2 (.1)		Potri.005G006800 [exp]	8.06	0.9422
AT4G05100	MYB	ATMYB74	myb domain protein 74 (.1)		Potri.019G118200 [exp]	10.95	0.9213

Compare expression of checked genes

Potri.005G021300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.