Plant FIBer expression Database

Potri.005G021400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G11420 1083 / 0 ATTIF3A1, ATEIF3A-1, TIF3A1, EIF3A eukaryotic translation initiation factor 3A (.1)
AT4G23330 45 / 0.0001 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G011900
[exp]
1361 / 0 AT4G11420 1028 / 0.0 eukaryotic translation initiation factor 3A (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031477
[exp]
1199 / 0 AT4G11420 1290 / 0.0 eukaryotic translation initiation factor 3A (.1)
Lus10015204
[exp]
1198 / 0 AT4G11420 1284 / 0.0 eukaryotic translation initiation factor 3A (.1)
Lus10015201
[exp]
858 / 0 AT4G11420 935 / 0.0 eukaryotic translation initiation factor 3A (.1)
Lus10031481
[exp]
651 / 0 AT4G11420 691 / 0.0 eukaryotic translation initiation factor 3A (.1)
Lus10015202
[exp]
297 / 1e-94 AT4G11420 313 / 2e-101 eukaryotic translation initiation factor 3A (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF01399 PCI PCI domain
Representative CDS sequence
>Potri.005G021400.2 pacid=42804005 polypeptide=Potri.005G021400.2.p locus=Potri.005G021400 ID=Potri.005G021400.2.v4.1 annot-version=v4.1
ATGTCGACTTTTGCCAAGCCAGAGAATGCCTTGAAGCGAGCTGAAGAGTTGATAAATGTTGGGCAGAAGCAAGATGCATTGCAAGCTCTACATGATCTAA
TCACCTCAAAGAGATACCGAGCTTGGCAAAAACCACTTGAAAGGATTATGTTTAAGTATGTAGAGCTTTGTGTTGACTTGCGGAGGGGCAGGTTTGCTAA
GGATGGTCTGATTCAGTACCGTATTGTTTGCCAACAAGTGAACGTCACTTCCTTGGAGGAGGTGATCAAGCATTTCATGCATCTTTCCACTGAGAAAGCT
GAACAAGCTCGTAGTCAGGCACAAGCCCTTGAAGAAGCTCTTGATGTGGATGATCTGGAAGCAGATAAAAGGCCAGAAGATCTGATGCTTAGTTATGTCA
GTGGTGAGAAGGGAAAGGAGAGGTCTGATCGTGAGCTTGTTACTCCTTGGTTCAAGTTTCTGTGGGAGACCTATAGAACAGTACTTGAAATATTACGAAA
CAACTCAAAGTTAGAGGCCCTATATGCGATGACAGCCCACCGAGCTTTCCAATTCTGTAAACAATACAAACGGACAACTGAATTTAGGCGGTTGTGTGAG
ATCATCAGGAACCATTTAGCAAACCTCAACAAATATAGAGACCAAAGGGATCGACCTGATCTCACAGCCCCTGAGAGCTTGCAGCTGTATCTTGATACAC
GATTTGAGCAGCTAAAAGTAGCTACCGAGCTTGAGCTCTGGCAGGAAGCTTTTCGGTCCATTGAAGATATCCATGGATTGATGTGCATGGTTAAAAAAAC
TCCCAAGGCATCCTTGATGGTGGTTTATTATGCCAAGCTAACAGAGATATTCTGGATTTCATCAAGTCATCTTTACCATGCTTATGCATGGTTAAAGCTT
TTTACACTTCAGAAAAGTTTCAATAAAAACTTAAGCCAGAAAGACTTGCAGATTATAGCATCATCTGTTGTTTTGGCTGCTCTAGCGGTGGCTCCTTACG
ATCACACACAGGGCGCATCTCATATGGAGCTTGAAAATGAGAAAGAGCGGAATATGCGGATGGCTAATCTTATAGGTTTCAATCTAGACCTGAAACCTGA
GAGTAGAGAAGTGCTTTCAAGGTCATCCCTTCTTTCAGAACTGGTATCCAAAGGTGTAATGAGCTGTGCAACTCAGGAAGTGAAAGATCTTTACCATCTT
TTGGAGCACGAATTTCTACCATTAGATCTTACAGCAAAGGTTCAGCCTTTGTTATCCAAAATTTCCAAACTAGGGGGAAAACTTACCTCAGCTTCTTCCG
TGCCTGAAGTGCACCTCTCCCAATATATCCCTGCCCTCGAGAAGCTTGCTACCCTGAGGTTGCTTCAACAGGTGTCTCAGGTGTATCAGACCATGAAAAT
TGAGAGTTTGTCTCAGATGATCCCATTTTTTGATTTCTCTGCTGTTGAGAAGATTTCGGTTGATGCTGTGAAACATAATTTCATAGCTATGAAACTGGAC
CATATGAAGCATGTTGTGCTGTTTGACACTCAGGATCTTGAATCTGATGGGCTGCGAGATCACTTGACTGTTTTTGCTGAATCCTTAAATAAAGCAAGGG
CTATGATTTATCCTCCAACAAAGAAATCATCAAAACTGGGTGAAATTTTACCGGGACTAGGGGAGATTGTTGATAAGGAACACAAGAGACTTCTAGCTCG
GAAATCCATCATTGAAAAGAGAAAGGAGGAACAAGAACGTCAACTTTTGGAAATGGAACGAGAGGAGGAGTCAAGGAGGCTGAAGCAGCAGAAGATTACA
GAAGAGGCAGAGCAGAAGAGGCTTGCAGCTGAGTATGAGCAAAGGAACAAACAAAGGATCCTCCGGGAAATTGAGGAGCGTGAACTTGAAGAAGCACAAG
CTTTACTTGAGGAACATGAGAAACGCAGTAAAAGGAAAGGAGGAAAGAAGCCGATCTTAGAAGGAGAGAAAGTGACGAAGCAAATTTTAATGGAAAGGGC
TTTGAGTGAGCAGCTCAGAGAGAGGCAGGAAATGGAGAAGAAATTACAGAAATTGGTTAAAACCATGGATTATTTGGAAAGAGCAAAAAGAGAAGAGGCA
GCCCCACTGATTGAAGCTGCTTTTCAACAACGATTGGTGGAAGAGAAAGCACTTCATGAACACGAGCAGCAGCAAGAAATTGAATTGAGCAGACAGCGCC
ATGATGGGGACCTCAGGGAGAAGAATAGGCTGTCTCGGATGTTGGAGAACAAGATCATTTTTGAGGAAAGAGTGAAGAGCCGCCGAGAGTCAGAGTTCAA
CCAAAGGAGAGCTGAGAGGGAAGAAAGGATCAACCAGATTGTTCAAGCTCGGAAACAAGAGAGAGAAGCTTTGAGGAAGAAAATATTCTTTGTGAGGTCT
GAAGAGGAGAGACTGAAAAGGCTGCGTGAAGAGGAAGAGGCTCGCAAGCATGAAGAGGATGAGAGACGCAGGAAAGAAGAAGCTGAACACAAGGCAAAGT
TGGATAAGATAGCTGAGAAGCAGAGACAGAGAGAACGCGAACTAGAAGAAAAGGAACGGATAAGGAGGGAAGCTCTCTTGGTTGACGGGCCTTCTAGGTC
TTCTGAGCTTCCTGCTGGTCCAGAGCCTGGAGCGGCTGCTGCACCAGCCGCTGGAAAGTATGTGCCCAGATTCCGGCGAGGGGGAACTGAAGGCTCGGCG
CAGGCTCCTCCAGAAACTGATAGGTGGGGAGGTGGAAGTGGTAGGCCAGCCCCTCCAGATTCTGATAAGTGGAGCAGTGGCAGTGCCAGGCAGCCCCCTT
CAGATACAGACCGGTGGGGCAGTGGTGGCAGCAGGCCTGATGATCGCAACCCCCCCAGTGATAGGTGGGGTGGAGGCTCAAAGTCAACTTGGTCATCATC
TAGGCCACGTGGTCGCTGA
AA sequence
>Potri.005G021400.2 pacid=42804005 polypeptide=Potri.005G021400.2.p locus=Potri.005G021400 ID=Potri.005G021400.2.v4.1 annot-version=v4.1
MSTFAKPENALKRAEELINVGQKQDALQALHDLITSKRYRAWQKPLERIMFKYVELCVDLRRGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKA
EQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKERSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCE
IIRNHLANLNKYRDQRDRPDLTAPESLQLYLDTRFEQLKVATELELWQEAFRSIEDIHGLMCMVKKTPKASLMVVYYAKLTEIFWISSSHLYHAYAWLKL
FTLQKSFNKNLSQKDLQIIASSVVLAALAVAPYDHTQGASHMELENEKERNMRMANLIGFNLDLKPESREVLSRSSLLSELVSKGVMSCATQEVKDLYHL
LEHEFLPLDLTAKVQPLLSKISKLGGKLTSASSVPEVHLSQYIPALEKLATLRLLQQVSQVYQTMKIESLSQMIPFFDFSAVEKISVDAVKHNFIAMKLD
HMKHVVLFDTQDLESDGLRDHLTVFAESLNKARAMIYPPTKKSSKLGEILPGLGEIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKQQKIT
EEAEQKRLAAEYEQRNKQRILREIEERELEEAQALLEEHEKRSKRKGGKKPILEGEKVTKQILMERALSEQLRERQEMEKKLQKLVKTMDYLERAKREEA
APLIEAAFQQRLVEEKALHEHEQQQEIELSRQRHDGDLREKNRLSRMLENKIIFEERVKSRRESEFNQRRAEREERINQIVQARKQEREALRKKIFFVRS
EEERLKRLREEEEARKHEEDERRRKEEAEHKAKLDKIAEKQRQRERELEEKERIRREALLVDGPSRSSELPAGPEPGAAAAPAAGKYVPRFRRGGTEGSA
QAPPETDRWGGGSGRPAPPDSDKWSSGSARQPPSDTDRWGSGGSRPDDRNPPSDRWGGGSKSTWSSSRPRGR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G11420 ATTIF3A1, ATEIF... eukaryotic translation initiat... Potri.005G021400
[exp]
0 1
AT4G02400 U3 ribonucleoprotein (Utp) fam... Potri.002G203700
[exp]
1.73 0.8392
AT4G32420 Cyclophilin-like peptidyl-prol... Potri.018G030300
[exp]
4.35 0.7259
AT3G63400 Cyclophilin-like peptidyl-prol... Potri.005G215800
[exp]
4.89 0.7621
AT1G48920 ATNUC-L1, PARL1 PARALLEL 1, nucleolin like 1 (... Potri.005G093100
[exp]
6.00 0.7901
AT1G42440 unknown protein Potri.005G250100
[exp]
8.30 0.7801
AT3G56150 ATTIF3C1, ATEIF... eukaryotic translation initiat... Potri.002G016900
[exp]
8.77 0.7603 Pt-TIF3.10
AT1G14610 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2,... Potri.007G004100
[exp]
9.38 0.7581 Pt-VALRS.2
AT3G16840 P-loop containing nucleoside t... Potri.010G063600
[exp]
10.39 0.7548
AT2G21440 RNA-binding (RRM/RBD/RNP motif... Potri.009G120900
[exp]
11.83 0.7762
AT1G06720 P-loop containing nucleoside t... Potri.017G017700
[exp]
13.41 0.7677

Potri.005G021400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.