Plant FIBer expression Database

Potri.005G021600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G40650 179 / 3e-54 PRP38 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G012000
[exp]
216 / 4e-68 AT2G40650 346 / 7e-118 PRP38 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015203
[exp]
173 / 2e-51 AT5G37370 52 / 3e-07 PRP38 family protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03371 PRP38 PRP38 family
Representative CDS sequence
>Potri.005G021600.2 pacid=42802964 polypeptide=Potri.005G021602.1.p locus=Potri.005G021600 ID=Potri.005G021600.2.v4.1 annot-version=v4.1
ATGGAGCTCGATCACTTAGGAGGTACTTATGGAGGAAATCGAAAACCGACGCCGTTTATGTGCTTGATTACGAAGGTGCTGCAAATTCAGCCCGAGAAAG
ATATCGTTGTTGAATTTATAAAATACGTGCGGGTGCTTGGTGCTTTTTATCTGCGACTTACTGGGACTGATATTGACGTGTATCGTTATTTAGAGCCTTT
GTATAATGACTACCGAAAGTTGAGGCAAAAACTAACTGATGGAAACTATTCTTGTGATATTGTTCTGCCACGTATTAAGAAAAGATGGACTCTTGAAACA
CTTGGTGCACTTGAAACTACAAAGTGTGTGTTGGAAGATGATTTTGAAAAGGAGGAAGAGCGAGAGGAGAATGAGCAACTTGATGGATTAGACAATGGTG
CTGATGAAAGGGATTATTGCCATGAAAGAAGCCCTGCAAGGGAAAGGGATAGGGATAGAAGACGTGACAGCCGCAGATACAGGGATCATGACTATGATAG
GGAGCGTGGACATGGAAGAGAGAGAGACAGGGAGAGAGACAGGGACTGGGACAGGGATCGCTATCGCTTGAAAGATGAAAGAGATTATGGTCGTGAGAGG
GAGCGAGAAAGAGAAAGGGAAGGCAGCGAGCGTGAAAGGCGGGATAGGGACCGTGGCAGACAGAGGAGTCTATCTCAGAGCCAAAGTAGGAGTCGGGATC
GCAAAAGACATGCCCATAGCAGTAGTCCTAAAAGGCGCAGAGATGGAGCAGAAGAACCAAAGAAGAAGAGGGAGAAGAAGGAAAAGAAAGATGATGGTAC
AGACCACCCTGATCCAGAGATTGCAGAAGCTAATAAGCTCCGAGCAGCCCTTGGGTTGAAACCACCTTAG
AA sequence
>Potri.005G021600.2 pacid=42802964 polypeptide=Potri.005G021602.1.p locus=Potri.005G021600 ID=Potri.005G021600.2.v4.1 annot-version=v4.1
MELDHLGGTYGGNRKPTPFMCLITKVLQIQPEKDIVVEFIKYVRVLGAFYLRLTGTDIDVYRYLEPLYNDYRKLRQKLTDGNYSCDIVLPRIKKRWTLET
LGALETTKCVLEDDFEKEEEREENEQLDGLDNGADERDYCHERSPARERDRDRRRDSRRYRDHDYDRERGHGRERDRERDRDWDRDRYRLKDERDYGRER
EREREREGSERERRDRDRGRQRSLSQSQSRSRDRKRHAHSSSPKRRRDGAEEPKKKREKKEKKDDGTDHPDPEIAEANKLRAALGLKPP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G40650 PRP38 family protein (.1) Potri.005G021600
[exp]
0 1
AT1G78100 AUF1 auxin up-regulated f-box prote... Potri.001G021500
[exp]
3.46 0.8485
AT3G19895 RING/U-box superfamily protein... Potri.008G085700
[exp]
5.09 0.8685
AT1G05670 Pentatricopeptide repeat (PPR-... Potri.019G075900
[exp]
5.91 0.8253
AT1G19100 Histidine kinase-, DNA gyrase ... Potri.015G079400
[exp]
8.36 0.8154
AT5G25060 RNA recognition motif (RRM)-co... Potri.006G265700
[exp]
9.53 0.8201
AT2G39340 AtSAC3A yeast Sac3 homolog A, SAC3/GAN... Potri.010G213700
[exp]
10.58 0.8262
AT1G70620 cyclin-related (.1.2.3) Potri.010G046000
[exp]
11.74 0.8208
AT4G24900 unknown protein Potri.012G098000
[exp]
12.48 0.8011
AT5G05450 P-loop containing nucleoside t... Potri.008G073100
[exp]
15.29 0.7556
AT1G79730 ELF7 EARLY FLOWERING 7, hydroxyprol... Potri.003G048900
[exp]
15.87 0.8175

Potri.005G021600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.