Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27030 1714 / 0 TPR3 TOPLESS-related 3 (.1.2) AT3G16830 1626 / 0 TPR2 TOPLESS-related 2 (.1) AT1G80490 1387 / 0 TPR1 TOPLESS-related 1 (.1.2) AT1G15750 1385 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT3G15880 1361 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT2G25420 229 / 4e-63 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 57 / 3e-08 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 57 / 5e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 52 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 51 / 4e-06 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012100 [exp] 2074 / 0 AT5G27030 1698 / 0.0 TOPLESS-related 3 (.1.2) Potri.013G081300 [exp] 1409 / 0 AT1G15750 1540 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.003G030000 [exp] 1408 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.001G200500 [exp] 1399 / 0 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.018G128000 [exp] 1392 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.006G066800 [exp] 1389 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.006G257900 [exp] 926 / 0 AT1G80490 1466 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G023900 [exp] 915 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G023800 [exp] 807 / 0 AT1G80490 1195 / 0.0 TOPLESS-related 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029876 [exp] 1816 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10020668 [exp] 1810 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10043258 [exp] 1419 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10011481 [exp] 1399 / 0 AT1G15750 2011 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10023119 [exp] 1395 / 0 AT1G15750 1959 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10019401 [exp] 1262 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10038094 [exp] 1169 / 0 AT1G80490 1525 / 0.0 TOPLESS-related 1 (.1.2) Lus10006650 [exp] 802 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10011905 [exp] 780 / 0 AT3G15880 920 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10001924 [exp] 656 / 0 AT1G15750 1006 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.005G021700.2 pacid=42804126 polypeptide=Potri.005G021700.2.p locus=Potri.005G021700 ID=Potri.005G021700.2.v4.1 annot-version=v4.1 ATGTCGTCTTTGAGTAGAGAATTGGTGTTTCTCATACTTCAGTTTCTTGAAGAAGAGAAATTCAAGGAGTCTGTCCACAAGCTCGAGAAGGAATCGGGGT TTTACTTCAACATGAAGTATTTCGAGGAGAAAGTGCTGGCTGGAGAATGGGATGAAGTTGAAAAGTACTTAGCGGGTTTTACCAAAGTTGATGATAACAG ATACTCAATGAAGATATTTTTTGAAATCAGGAAACAGAAGTATCTTGAAGCGCTTGATAGGCAAGACAAGGCGAAAGGTGTTGAAATTTTAGTGAGCGAT TTGAAGGTATTCTCGACATTTAATGAGGAACTGTACAAAGAAATCACTCAGCTTTTAACTCTTAACAATTTCAGGGAAAATGAGCAACTATCCAAGTATG GCGACACTAAAACAGCTCGTAGCATTATGTTGGTAGAGTTAAAAAAGCTTATTGAAGCAAATCCTCTCTTTCGTGATAAGCTTGCGTTTCCTACCTTGAA GTCATCTCGATTGAGGACCCTAATCAATCAGAGTTTGAACTGGCAGCACCAGTTATGCAAGAATCCAAGGCCGAACCCAGACATTAAGACTTTATTCACA GACCACACATGTTCACCTATGAATGGTCCTCTTGCTGCTGCACCTGTCAATCTTCCAGTCGCTGCTGCTGCTGCAAAGCCTGCTGCATATACTCCTCTTG GGGCTCATGGTCCCTTTCCAGCTACTGGTGCAGCAGCTAATACTAGTGCTTTAGCCAGTTGGATGGCAAATACTTCCGCTTCTTCATCTGTCCAAGCAGC TGTTGTTACTGCATCGTCAATTCCTATTCCACAAAATCAAGTTCCAGTCTTGAAACGTCCAAGAACACCACCAACCGCCCTGGGCATCGTTGATTATCAG AATCCTGATCATGAACTAATTAAACGTCTCCGGCCTGCCCAATCTGTTGAAGAGGTCACATATCCAGCATCTAGACAACATGCATCTTGGTCTCTGGAAT ACCTGCCAAGGACAGTAGCTTTTTCCTTGCATCCAGGGTCAGCTGTCATGAGCATGGATTTTCACCCTTCTCACCACACATTGCTTCTTGTTGGTTCTGT TAATGGTGAAATTACACTTTGGGAACTCATCTCACGGGAGAGGTTGTTTTCGAAGCCCTTCAAGATTTGGGACATGTCAGCTTGTTCATTGCAATTTCAG GCGTCTGGTTTCAAGGATGCCTCAATTTCTGTTACCCGTGTTGCATGGAGTCCTGATGGAAATTTTGTGGGGGCTGCATTTAATAAACACTTGATTCACT TGTATGCTTATAATGGACCAAATGATCTGCGCCAGCATTTAGAGATTGATGCCCATGTTGGTGGTGTGAATGATTTGGCTTTTGCTCATCCAAACAAACA ACTATGTGTGGTCACCTGTGGAGATGACAAGCTAATAAAGGTGTGGGATTTAACAGGACGGAAGCTGTTTAATTTTGGAGGTCATGAGGCACCGGTTTAT AACATTTGTCCACACCACAAAGAGAACATCCAGTTCATATTCTCTACTGCTATTGATGGGAAAATAAAGGCCTGGCTATATGACAATATGGGATCTAGAG TTGACTACGATGCTCCTGGCCGGTGGTGTACTACGATGCTTTACAGCACTGATGGCAGTAGGCTGTTCTCTTGTGGAACAAGTAAAGATGGAGAATCTTA TCTGGTCGAATGGAATGAAAGTGAAGGATCGATAAAGAGGAGTTTTGTTGGGTTCAGAAAGAAATCAGCAGGTGTTGTGCAGTTTGACACTACCCAAAAC CACTTTTTGGCTGCTGGTGATGATGGTCAGATAAAGTTTTGGGATATGGAGAATACCAATGTCCTCACAAGCACAGATGCAGATGGGGGGTTGCAGACTC TTCCTCGCCTGAGATTCAACAGGGAAGGGAATCTTCTCGCTGTTTCCACAGCAGACAATGGATTCAAGATACTTGCAAATGCTGCTGGTCTCAGATCATT GAGAGCAGTTGAAACTCAATCTTTTGAAGCATTGAGATCACCTATGGAATCTGCTGCTATCAAGGTTTCTGGTGCTTCTAGCATCGCAAATGCCAGTCCA GTGAACTGTAAAGTGGAAAGGAACTCTCCCGTCAGGCCTTCTCCAATTCTTAATGGAGTTGATCCTTTGAATAGAAGCATGGAAAAACCAAGAACTGTGG ATGATGTAATTGATAAAACAAAACCATGGCAATTGGCTGAAATTGCAGATCCCAGCGAGTGTAGATTAGTTACCTTGCCTGAGAGCGCAGATACCTCCAG CAAGGTTGTTCGTCTTCTATATACAAATTCTGGTGTTGGCATGTTGGCTCTAGGAGCAAATGGTATTCAGAAGCTTTGGAAGTGGCCACGCAATGAACAA AATCCAAGTGGAAAGGCCACCGCCAGTGTTGCTCCACAGCATTGGCAACCAAACAGTGGCCTTCTTATGACTAATGATGTCTCAGGTGTCAACCTTGAAG AAGCAGTCCCATGCATAGCTCTCTCAAAGAATGACTCATATGTAATGTCAGCCACTGGTGGGAAGGTTTCACTGTTTAACATGATGACATTCAAGGTGAT GACAACTTTCATGTCCCCTCCCCCTGCTTCAACCTTTCTAGCATTCCATCCCCAGGATAACAATATCATAGCCATTGGAATGGAGGATTCAACTATCCAC ATATACAATGTTAGAGTGGATGAGGTGAAATCAAAATTAAAGGGTCACCAGAAGCGAGTAACTGGTTTAGCCTTTTCCACCAATCTTAATATCTTGGTAT CATCAGGTGCTGATGCACAGCTTTGCATCTGGAGCATTGATACATGGGAGAAGAGAAAATCAGTTGCTATTCAAATTCCTGCAGGAAAGTCACCTACTGG TGACACCCGTGTACAGTTCCACTCTGATCAGACTCGCTTGCTTGTGATTCATGAGACTCAGTTGGCAATATATGATGCCTCCAAGATGGAGCGTATCCGT CAGTGGGTACCACAAGATGCTGTTTCTGCACCCATATCTTATGCAGCATACTCTTGCAACAGTCAATTGATTTATGCTACATTCTGTGATGGTAACATTG GAGTGTTTGATGCTGATAGCCTGAGGCTTAGATGCCGAATTGCCCCCTCAGTATACAACGGGAGCCAAACTGTGTACCCACTAGTTGTTGCTACGCATCC ACTCGACCCAAACCAGTTAGCCTTGGGGTTGACAGATGGATCTGTTAAGGTGATAGAACCCACCGAATCAGAAGGGAAGTGGGGAACGAGTCCGCCTGTA GATAATGGGGTGCTAAATGGTAGGACGACATCATCATCTACTACAAGCAACCACACGCTAGATCAGTTGCAAAGATAA
AA sequence Show only first row Show all	>Potri.005G021700.2 pacid=42804126 polypeptide=Potri.005G021700.2.p locus=Potri.005G021700 ID=Potri.005G021700.2.v4.1 annot-version=v4.1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFYFNMKYFEEKVLAGEWDEVEKYLAGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKGVEILVSD LKVFSTFNEELYKEITQLLTLNNFRENEQLSKYGDTKTARSIMLVELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFT DHTCSPMNGPLAAAPVNLPVAAAAAKPAAYTPLGAHGPFPATGAAANTSALASWMANTSASSSVQAAVVTASSIPIPQNQVPVLKRPRTPPTALGIVDYQ NPDHELIKRLRPAQSVEEVTYPASRQHASWSLEYLPRTVAFSLHPGSAVMSMDFHPSHHTLLLVGSVNGEITLWELISRERLFSKPFKIWDMSACSLQFQ ASGFKDASISVTRVAWSPDGNFVGAAFNKHLIHLYAYNGPNDLRQHLEIDAHVGGVNDLAFAHPNKQLCVVTCGDDKLIKVWDLTGRKLFNFGGHEAPVY NICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGRWCTTMLYSTDGSRLFSCGTSKDGESYLVEWNESEGSIKRSFVGFRKKSAGVVQFDTTQN HFLAAGDDGQIKFWDMENTNVLTSTDADGGLQTLPRLRFNREGNLLAVSTADNGFKILANAAGLRSLRAVETQSFEALRSPMESAAIKVSGASSIANASP VNCKVERNSPVRPSPILNGVDPLNRSMEKPRTVDDVIDKTKPWQLAEIADPSECRLVTLPESADTSSKVVRLLYTNSGVGMLALGANGIQKLWKWPRNEQ NPSGKATASVAPQHWQPNSGLLMTNDVSGVNLEEAVPCIALSKNDSYVMSATGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIH IYNVRVDEVKSKLKGHQKRVTGLAFSTNLNILVSSGADAQLCIWSIDTWEKRKSVAIQIPAGKSPTGDTRVQFHSDQTRLLVIHETQLAIYDASKMERIR QWVPQDAVSAPISYAAYSCNSQLIYATFCDGNIGVFDADSLRLRCRIAPSVYNGSQTVYPLVVATHPLDPNQLALGLTDGSVKVIEPTESEGKWGTSPPV DNGVLNGRTTSSSTTSNHTLDQLQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Potri.005G021700 [exp]	0	1
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Potri.001G262600 [exp]	1.00	0.9142
AT3G10650		AtNUP1	unknown protein		Potri.008G014800 [exp]	3.16	0.8874
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.009G094400 [exp]	3.46	0.8936
AT5G45190			Cyclin family protein (.1.2)		Potri.007G067100 [exp]	3.87	0.8927
AT3G55560	AT-hook	AHL15, AGF2	AT-hook motif nuclear-localize...		Potri.008G058700 [exp]	4.89	0.8777
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Potri.002G141300 [exp]	6.00	0.8842
AT2G18900			Transducin/WD40 repeat-like su...		Potri.006G166500 [exp]	6.16	0.8652
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.008G178200 [exp]	6.32	0.8880
AT2G35050			Protein kinase superfamily pro...		Potri.001G123500 [exp]	7.48	0.8703
AT1G21610			wound-responsive family protei...		Potri.005G182300 [exp]	12.84	0.8750

Compare expression of checked genes

Potri.005G021700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.