Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09155 290 / 5e-98 ATPP2-B15 phloem protein 2-B15 (.1) AT1G56240 272 / 2e-91 ATPP2-B13 phloem protein 2-B13 (.1) AT1G56250 264 / 4e-88 ATPP2-B14 phloem protein 2-B14 (.1) AT5G24560 233 / 2e-76 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02240 227 / 6e-73 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT2G02360 219 / 1e-70 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02250 206 / 3e-65 ATPP2-B2 phloem protein 2-B2 (.1) AT2G02230 203 / 1e-63 ATPP2-B1 phloem protein 2-B1 (.1) AT2G02340 195 / 8e-61 ATPP2-B8 phloem protein 2-B8 (.1) AT1G80110 193 / 1e-60 ATPP2-B11 phloem protein 2-B11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012600 [exp] 476 / 2e-171 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.018G015800 [exp] 257 / 4e-85 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G267000 [exp] 254 / 8e-84 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G266900 [exp] 233 / 1e-75 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016000 [exp] 231 / 8e-75 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.018G016100 [exp] 221 / 3e-71 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.001G050100 [exp] 209 / 9e-67 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.013G012666 [exp] 145 / 7e-43 AT1G09155 120 / 2e-33 phloem protein 2-B15 (.1) Potri.012G120400 [exp] 107 / 2e-27 AT4G19840 233 / 1e-76 phloem protein 2-A1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029872 [exp] 359 / 1e-125 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10020674 [exp] 359 / 2e-125 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10020673 [exp] 324 / 9e-112 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1) Lus10031484 [exp] 325 / 3e-111 AT1G09155 260 / 1e-85 phloem protein 2-B15 (.1) Lus10015208 [exp] 320 / 5e-110 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1) Lus10031473 [exp] 259 / 7e-87 AT1G09155 228 / 1e-74 phloem protein 2-B15 (.1) Lus10015209 [exp] 235 / 9e-77 AT1G09155 209 / 1e-66 phloem protein 2-B15 (.1) Lus10042713 [exp] 231 / 9e-75 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10029674 [exp] 230 / 2e-74 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10025666 [exp] 222 / 1e-70 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14299 [poplar] [flax] PP2 Phloem protein 2
Representative CDS sequence Show only first row Show all	>Potri.005G022000.1 pacid=42802489 polypeptide=Potri.005G022000.1.p locus=Potri.005G022000 ID=Potri.005G022000.1.v4.1 annot-version=v4.1 ATGGAGGGTCTAATGGATGATGATCAGTTTAAGATATTGCCTGAAGGCTGTGTTTCTACAATTCTTTCCTTCACATCCCCACAAGATGCATGCAAGTCTT CATTGGTTTCAACTATATTTCAATCAGCTGCAGATTCTGATATTGTCTGGGAAAGATTTTTGCCTACTGATTACCAAGATATAGTCTCAAAGTCCAATTT CCCTTTCAAGTTTTCTTCAAAGAAAGAGCTTTTTCTTCAACTTTGCAACTCTCTTCTCATTGATGGTGGTAGAAAGAGCTTCAGGATAGAGAAATCATCA GGCAAGAAATCCTTTATACTTTCTGCAAGAGATCTTCACATAACATGGAGCAATGAACCACAATATTGGCACTGGGCTTCTCTACCAGAATCAAGGTTCT CTGAAGTGGCCGTGCTCAGAACAATGTGCTGGCTAGAGATTGTAGGCAAGATTGAGACACAAATGCTATCCCCAAACACTAAATATGGAGCATATCTTAT TCTAAAAATCAGTGAACGTTCATACGGGCTTGATTCAATGCCATCAGAGATATCAGTTGAAGTGGGTAACAATCAAGGATCAACCACCACAGCCTATTTA CGTCTTGCCCAAGAACATGCCAGGAAACAGCAAATGGAGAGACTAGTTTACGGGAATCGCACGGAGAGGTTAAAATCAAGGGTGGCAGAAGGGGATGGAA GAGTCGCAAGTGAAAGAGAAGATGGATGGTTGGAGATTGAGTTGGGAGAGTTCTTTAGCGGTGAAAATGACGAGGAAGTGAAGATGAGTTTGATGGAAGT AAAAGGTCATCACTTGAAAGGTGGACTTATTATTGAAGGGATTGAAGTGAGGCCTAAACATTAA
AA sequence Show only first row Show all	>Potri.005G022000.1 pacid=42802489 polypeptide=Potri.005G022000.1.p locus=Potri.005G022000 ID=Potri.005G022000.1.v4.1 annot-version=v4.1 MEGLMDDDQFKILPEGCVSTILSFTSPQDACKSSLVSTIFQSAADSDIVWERFLPTDYQDIVSKSNFPFKFSSKKELFLQLCNSLLIDGGRKSFRIEKSS GKKSFILSARDLHITWSNEPQYWHWASLPESRFSEVAVLRTMCWLEIVGKIETQMLSPNTKYGAYLILKISERSYGLDSMPSEISVEVGNNQGSTTTAYL RLAQEHARKQQMERLVYGNRTERLKSRVAEGDGRVASEREDGWLEIELGEFFSGENDEEVKMSLMEVKGHHLKGGLIIEGIEVRPKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Potri.005G022000 [exp]	0	1
					Potri.006G038250 [exp]	5.38	0.9888
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.007G025100 [exp]	6.78	0.9805
AT5G37490			ARM repeat superfamily protein...		Potri.012G042600 [exp]	7.14	0.9787
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.009G016100 [exp]	8.83	0.9948
AT5G44400			FAD-binding Berberine family p...		Potri.011G159100 [exp]	10.39	0.9948
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.015G074500 [exp]	11.22	0.9818
AT5G44400			FAD-binding Berberine family p...		Potri.011G160400 [exp]	11.61	0.9947
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.008G118400 [exp]	12.48	0.9943
AT5G14740		BETACA2, CA18, ...	CARBONIC ANHYDRASE 18, BETA CA...		Potri.015G076000 [exp]	13.22	0.9845	Pt-CA1.1
					Potri.001G203400 [exp]	13.52	0.9701

Compare expression of checked genes

Potri.005G022000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.