Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022300 [exp] 343 / 2e-122 ND / Potri.005G022250 [exp] 314 / 3e-111 ND / Potri.013G012733 [exp] 152 / 2e-47 ND / Potri.013G012800 [exp] 142 / 2e-43 ND / Potri.013G012766 [exp] 139 / 4e-42 ND / Potri.005G022200 [exp] 139 / 5e-42 ND / Potri.005G195200 [exp] 125 / 2e-36 AT5G64620 42 / 7e-05 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.001G073350 [exp] 119 / 3e-34 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007598 [exp] 86 / 1e-20 ND 42 / 2e-04 Lus10035527 [exp] 79 / 2e-18 AT4G24640 40 / 4e-04 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10040145 [exp] 76 / 3e-17 ND 40 / 4e-04 Lus10000961 [exp] 74 / 2e-16 ND 39 / 5e-04 Lus10011019 [exp] 76 / 3e-16 AT4G17610 1595 / 0.0 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10027768 [exp] 72 / 1e-15 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.005G022400.1 pacid=42805622 polypeptide=Potri.005G022400.1.p locus=Potri.005G022400 ID=Potri.005G022400.1.v4.1 annot-version=v4.1 ATGGGTTCCAGGAATACTAGTGTTTTGTTTTTTGCTGCCATTGCCTTGTTTCTCTTCCTGCATTTTCCCTCTCAAACCGAGGCAACAATCCCAACAGAAT TGGTGAGCAAGGTCTGCCCACAAACCGAAATCCGTAGCTATGAAATCTGCGTCAAATCCCTGATGGCCAATCCAAAATCATTGATGGTGACCAGTGCCAA GGCTGTTGCAGAGAATGCCTTGGATAGGGCAAGAAGAGAAACAACTGCTACAAGCTGTTTCTTTGCTGCCTTGCTCAAGAGAAAAGACATAAACCCTGCA TCTAAGGCAGCACTCGAGAGTTGTTCATCCCTTTTCAAACAATCAGTTACATTCATTAGCCTCGATGGGCTATCAGGTGGGACTGCAAGCTTAGACCTGC ATTCTGCTCTTGATAAAGCCACGGAATGTAAATCAGAATTATCGGCAGCCCATGTTAGTATCAAATCTGTTACTGACAAGCTCGAGGAATGGGGGAATTT CTATTCGATTGCCTCTGAAGCCGTATATGCTGTTGAAAACCCCGAGCATTGA
AA sequence Show only first row Show all	>Potri.005G022400.1 pacid=42805622 polypeptide=Potri.005G022400.1.p locus=Potri.005G022400 ID=Potri.005G022400.1.v4.1 annot-version=v4.1 MGSRNTSVLFFAAIALFLFLHFPSQTEATIPTELVSKVCPQTEIRSYEICVKSLMANPKSLMVTSAKAVAENALDRARRETTATSCFFAALLKRKDINPA SKAALESCSSLFKQSVTFISLDGLSGGTASLDLHSALDKATECKSELSAAHVSIKSVTDKLEEWGNFYSIASEAVYAVENPEH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.005G022400 [exp]	0	1
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Potri.012G060700 [exp]	4.47	0.7685
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Potri.006G219700 [exp]	5.74	0.7440
AT5G12180		CPK17	calcium-dependent protein kina...		Potri.001G274700 [exp]	8.77	0.6545
					Potri.004G065750 [exp]	9.38	0.6389
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.009G091950 [exp]	10.39	0.6199
AT5G63390			O-fucosyltransferase family pr...		Potri.015G092600 [exp]	13.49	0.5744
AT4G38140			RING/U-box superfamily protein...		Potri.004G209600 [exp]	14.07	0.6088
					Potri.009G026850 [exp]	21.49	0.5344
AT2G04025		RGF3	root meristem growth factor 3,...		Potri.008G112400 [exp]	26.98	0.5153
AT5G12060			Plant self-incompatibility pro...		Potri.006G170200 [exp]	27.49	0.5191

Compare expression of checked genes

Potri.005G022400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.