Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27920 626 / 0 F-box family protein (.1) AT5G01720 309 / 7e-96 RNI-like superfamily protein (.1) AT4G15475 110 / 5e-25 F-box/RNI-like superfamily protein (.1) AT2G25490 86 / 3e-17 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT1G21410 79 / 1e-15 SKP2A F-box/RNI-like superfamily protein (.1) AT1G77000 79 / 1e-15 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT5G25350 79 / 3e-15 EBF2 EIN3-binding F box protein 2 (.1) AT5G23340 78 / 4e-15 RNI-like superfamily protein (.1) AT1G80630 69 / 8e-12 RNI-like superfamily protein (.1) AT3G58530 59 / 3e-09 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G013100 [exp] 999 / 0 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.019G123400 [exp] 325 / 4e-102 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 324 / 1e-101 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 316 / 1e-98 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 101 / 1e-22 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 91 / 9e-19 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 83 / 2e-16 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 83 / 3e-16 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G068500 [exp] 81 / 1e-15 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029869 [exp] 452 / 9e-154 AT5G27920 441 / 5e-150 F-box family protein (.1) Lus10001264 [exp] 327 / 9e-103 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10012214 [exp] 307 / 1e-91 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10029870 [exp] 159 / 2e-45 AT5G27920 125 / 4e-34 F-box family protein (.1) Lus10012764 [exp] 125 / 2e-29 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10030102 [exp] 109 / 9e-25 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002165 [exp] 106 / 9e-24 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10040998 [exp] 93 / 7e-20 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 93 / 8e-20 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10020676 [exp] 85 / 8e-20 AT5G27920 59 / 2e-11 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13516 [poplar] [flax] LRR_6 Leucine Rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G022600.1 pacid=42804062 polypeptide=Potri.005G022600.1.p locus=Potri.005G022600 ID=Potri.005G022600.1.v4.1 annot-version=v4.1 ATGTCAACTCGGTCTACACCTATACTTTCTGTCTTAACAGAAGATTTACTCATTCGGGTCAATGAGAAACTCGTTCAAGACTCAGATCGCAAGACATGGA GGCTCGTTTGCAAAGAATTACATCGAGTTGACTCACTCACACGCAAAACTCTACGTGTCCTTCATGTTGAGTTCTTATTAACTCTCCTCAAGAACTACAC CAACCTCCACACTCTAGACCTCTCAGTCTGTCCACGTATCGACGACTGGACTATATCGTCGTTACTACATCATGTTGATCACTCGATATGGGCTAGGAAT TTGAAGTGTTTGAACTTGAGTAGGGCTAATGGGCTGAAGTTTGCGGGGTTGGAGATGTTGGTGGGTGCTTGTAAGGGTTTGGAGAGTGTTGATGTGTCGT ATTGTTGTGGGTTTGGTGATAGGGAGGCGGCAGCGATATCGGGTTGTGGAGGGTTGAGGGAGTTGAGGATGGATAAGTGTTTAGGAGTCAGTGATGTTGG GTTGGCTAAGATTGTTGTTGGGTGTGGAAGATTGGAGAGGTTGAGTTTGAAGTGGTGTATGGAGATTAGTGATCTTGGTGTTGAGCTTTTGTGTAAGAAG TGCTTGGAGTTGAAGTTTCTTGATGTTTCTTATCTCAAGGTGACGAGTGAATCGCTGCGTTCTATTGCTTCTTTGCCAAAGCTGGAGGATTTGGCTATGG TGGGATGCCCTTTTGTAAATGATGTTGGATTGCAATTTCTTGAAAATGGATGCCCTTTACTGCAGAAAATTGATGTTGCAAGGTGTGATTGTGTCAGTTC ATATGGGTTAAGTTCCTTGATTGGAGGACATAGTGATCTTCTGCATATTGATGCAGGTCACTGCTTTTCAGAAGTTTCTCCAAGCTTTGTCAAGTGCACA CAGAAATTGAAGAATCTGAACACCATCATAATTGATGGGGTTCGAGGTTCCGACACTATTTTCCAGACAATCAGCAGTAACTGCAAGTCTTTAATTGAAA TTGGGTTGAGCAAATGCGGAGGGGTCACTAATATGGGAATTATTCAGCTGGTGTCTGGCTGTGTCAATCTGAAGATCATCAATTTAACATGTTGCCGTTC TATAGCCGATGCTGCAATATCTGCTATAGCAAACTCATGTAGGAACCTTCTGTGCCTGAAGTTAGAGTCTTGCAATATGATCACTGAGAAGAGTCTCGAA CAGCTTGGATTACATTGCTTGCTACTTGAAGTGCTTGATCTCACCGACTGTTGTGGCATAAATGACAGAGGGCTTGAACGCCTTTCTAGATGTTCCAGGC TTTTGTGTTTGAAATTAGGACTTTGCACAAACATATCAGACAAAGGACTCTTTTATATTGCTTCTAATTGTTCAGAGCTTCATGAACTTGATCTATACCG CTGTAAGAATATTGGAGATGGTGGTTTAGCAGCTTTATCAAGTGGCTGCAAGAAGTTAAGGAAGCTGAACTTGTCATACTGCATTGAGGTCACTGACAAA GGGATGAAGTCTCTTGGTTATTTGGAGGAATTATCTGACTTGGAGTTGAGGGGGCTTGATAAAATCACAAGTGTAGGTTTGACAGCATTGGTTACCAGGT GTAAGAGGCTGACCTATTTAGACTTGAAACATTGCGAGAAAATTGATGATTCAGGGTTTCAGGTACTTGCCTATTACTCACGGAACTTGCGACAGTTAAA TTTGAGCTACTGTGCTATCACGGACATGACATTATGCATGCTGATGGGAAACTTGACTCGCCTGCAAGATGTGGATTTGGTGCACCTCACAAATGTCACT GTGGAGGGGTTTGAGCTCGTGCTTAGAGCCTGCTGTGTCAGAATCAAGAAGATCAAGTTAGTTGCTGCTCTAAGTTTCTTGCTTTCCTCTGAAGTACAAG GGATTTTGCATGCCAGGGGTTGCAAAATTAGATGGGATTAG
AA sequence Show only first row Show all	>Potri.005G022600.1 pacid=42804062 polypeptide=Potri.005G022600.1.p locus=Potri.005G022600 ID=Potri.005G022600.1.v4.1 annot-version=v4.1 MSTRSTPILSVLTEDLLIRVNEKLVQDSDRKTWRLVCKELHRVDSLTRKTLRVLHVEFLLTLLKNYTNLHTLDLSVCPRIDDWTISSLLHHVDHSIWARN LKCLNLSRANGLKFAGLEMLVGACKGLESVDVSYCCGFGDREAAAISGCGGLRELRMDKCLGVSDVGLAKIVVGCGRLERLSLKWCMEISDLGVELLCKK CLELKFLDVSYLKVTSESLRSIASLPKLEDLAMVGCPFVNDVGLQFLENGCPLLQKIDVARCDCVSSYGLSSLIGGHSDLLHIDAGHCFSEVSPSFVKCT QKLKNLNTIIIDGVRGSDTIFQTISSNCKSLIEIGLSKCGGVTNMGIIQLVSGCVNLKIINLTCCRSIADAAISAIANSCRNLLCLKLESCNMITEKSLE QLGLHCLLLEVLDLTDCCGINDRGLERLSRCSRLLCLKLGLCTNISDKGLFYIASNCSELHELDLYRCKNIGDGGLAALSSGCKKLRKLNLSYCIEVTDK GMKSLGYLEELSDLELRGLDKITSVGLTALVTRCKRLTYLDLKHCEKIDDSGFQVLAYYSRNLRQLNLSYCAITDMTLCMLMGNLTRLQDVDLVHLTNVT VEGFELVLRACCVRIKKIKLVAALSFLLSSEVQGILHARGCKIRWD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27920			F-box family protein (.1)		Potri.005G022600 [exp]	0	1
AT4G23030			MATE efflux family protein (.1...		Potri.015G135600 [exp]	2.64	0.7627
AT2G15760			Protein of unknown function (D...		Potri.009G105400 [exp]	4.24	0.7593
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.002G039200 [exp]	12.80	0.7275
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Potri.018G071400 [exp]	13.26	0.6756	AKT1.2
AT1G80610			unknown protein		Potri.001G313900 [exp]	15.87	0.6440
AT3G26680		SNM1, ATSNM1	SENSITIVE TO NITROGEN MUSTARD ...		Potri.014G139600 [exp]	31.36	0.6979
AT5G53750			CBS domain-containing protein ...		Potri.001G402900 [exp]	36.23	0.6107
AT5G13500			unknown protein		Potri.001G275600 [exp]	40.89	0.6204
AT5G60760			P-loop containing nucleoside t...		Potri.004G213500 [exp]	44.54	0.6316
					Potri.009G034150 [exp]	44.89	0.5968

Compare expression of checked genes

Potri.005G022600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.