Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05620 704 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 508 / 1e-176 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33220 479 / 3e-165 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) AT5G53370 450 / 6e-153 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G49220 450 / 9e-153 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 415 / 9e-140 ATPMEPCRA methylesterase PCR A (.1) AT4G02320 409 / 8e-138 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G23200 409 / 2e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 405 / 2e-136 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 411 / 8e-136 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G013200 [exp] 1007 / 0 AT3G05620 702 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134500 [exp] 480 / 2e-165 AT4G33220 677 / 0.0 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) Potri.012G014500 [exp] 477 / 2e-163 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G013700 [exp] 477 / 3e-163 AT3G49220 805 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 439 / 2e-149 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 436 / 1e-148 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 435 / 2e-147 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 427 / 1e-144 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 425 / 3e-144 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029868 [exp] 801 / 0 AT3G05620 684 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020677 [exp] 796 / 0 AT3G05620 681 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10010170 [exp] 456 / 6e-151 AT3G43270 628 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 433 / 9e-147 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10017375 [exp] 423 / 3e-144 AT3G43270 525 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 429 / 4e-144 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 418 / 4e-142 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 414 / 2e-139 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 407 / 2e-136 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10009110 [exp] 399 / 1e-133 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.005G022700.1 pacid=42805136 polypeptide=Potri.005G022700.1.p locus=Potri.005G022700 ID=Potri.005G022700.1.v4.1 annot-version=v4.1 ATGGCCTTAGCTAATTTTCTTTTTATTTTATTTTTCCTACCTTCTCTTGAAGCTTTATCCAATGTAACCTCATCAGAAGAACAAACATTAAATGCACAAG CTTTGATTATGCAAGCTTGTAGCGATGTTGAAAACCAGAGCTCATGCCTATCAAATTTTCAAGCTGAGCTCAAAAAGAGTGGTCCTACTGCACATTCTAT TCTCCATGCTGCCCTTAGGGCAACGCTCGATGAAGCGATGCGAGCCATTGATATGATCACCAAGTTCAATGCGTTGTCTGTCAGTTATCGTGAACAAGTT GCGATCGAGGATTGCAAAGAGCTTCTTGATTTCTCAGTATCTGAGCTAGCATGGTCCTTAAAGGAGATGAACAATATCCGAGCAGGCATAAAGAATGTTC ACTACGAGGGAAACTTGAAAGCTTGGCTTAGTGCTGCACTAAGCAACCCAGATACGTGCCTTGAAGGATTTGAAGGCACAGATGGACATCTCGAGAACTT TATCAGAGGAAGCCTGAAACAAGTCACGCAGCTAATTGGCAACGTCTTAGCTTTGTATACTCAGTTGCATAGCTTACCTTTTAAACCTCCACGAAACGAT AATGGTACTACTACAAATTCAGGTTCGGATAAGTTCCCAGAGTGGATGACAGAAGGTGATCAAGAGCTTCTGAAAGGCAGTTCTCTTGGTATGCACATAG ATGCAATTGTAGCTGGAGATGGCACCGGTCACTACCGTACCATCACAGAGGCCATTAATGAAGCTCCAAGCTATAGTAATAGAAGGTATATCATATATGT GAAGAAGGGTGTTTATAGAGAAAACATTGACATGAAGAGGAAGAAATCCAATATCATGTTCGTCGGGGACGGTATTGGACAGACTGTGGTCACAGGCAAT CGCAATTTCATGCAAGGATGGACTTCCTTTAGAACTGCTACTGTGGCTGTCTCTGGAAAGGGATTCATAGCAAGAGACATGACATTTCGCAACACGGCTG GACCATTAAACCATCAAGCTGTGGCCCTTCGAGTTGATTCAGACCAATCCGCTTTCTACCGGTGCAGCATGGAAGGCTATCAAGACACCCTCTATGCTCA CTCTCTCCGCCAATTTTACCGCGAATGTGAGATTTATGGCACCATAGATTACATCTTTGGCAATGGTGCTGCTGTGTTCCAAAATTGCAAGATATACACT AGAGTGCCACTACCACTACAAAAGGTTACAATCACTGCTCAAGGCAGGAAAAACCCTCACCAAAGCACCGGATTTTCGATTCAAGATAGCTACATTTTTG CCTCGCAACCGACATACTTAGGGCGGCCATGGAAGCAATATTCCAGGACAGTTTTCATGAACACATACATGAGCGCTCTGGTCCAGCCTAGAGGGTGGCT TGAGTGGTATGGAAACTTTGCATTAGGCACATTGTGGTATGGTGAGTATAGGAACCATGGCCCTGGAGCATTACTATCTGGCCGGGTCAAATGGCCTGGC TACCACATCATTCAGGATGTTGCCACAGCTAAATTTTTTACCGCCGCACAGTTCATCGACGGCTTGTCATGGTTGCCATCGACCGGCGTCAAGTTCACAG CAGGCTTGAGCAATTAA
AA sequence Show only first row Show all	>Potri.005G022700.1 pacid=42805136 polypeptide=Potri.005G022700.1.p locus=Potri.005G022700 ID=Potri.005G022700.1.v4.1 annot-version=v4.1 MALANFLFILFFLPSLEALSNVTSSEEQTLNAQALIMQACSDVENQSSCLSNFQAELKKSGPTAHSILHAALRATLDEAMRAIDMITKFNALSVSYREQV AIEDCKELLDFSVSELAWSLKEMNNIRAGIKNVHYEGNLKAWLSAALSNPDTCLEGFEGTDGHLENFIRGSLKQVTQLIGNVLALYTQLHSLPFKPPRND NGTTTNSGSDKFPEWMTEGDQELLKGSSLGMHIDAIVAGDGTGHYRTITEAINEAPSYSNRRYIIYVKKGVYRENIDMKRKKSNIMFVGDGIGQTVVTGN RNFMQGWTSFRTATVAVSGKGFIARDMTFRNTAGPLNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSLRQFYRECEIYGTIDYIFGNGAAVFQNCKIYT RVPLPLQKVTITAQGRKNPHQSTGFSIQDSYIFASQPTYLGRPWKQYSRTVFMNTYMSALVQPRGWLEWYGNFALGTLWYGEYRNHGPGALLSGRVKWPG YHIIQDVATAKFFTAAQFIDGLSWLPSTGVKFTAGLSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05620			Plant invertase/pectin methyle...		Potri.005G022700 [exp]	0	1
AT5G18970			AWPM-19-like family protein (....		Potri.008G200000 [exp]	3.16	0.9614
AT3G17380			TRAF-like family protein (.1)		Potri.001G130700 [exp]	3.16	0.9719
AT3G15800			Glycosyl hydrolase superfamily...		Potri.001G192200 [exp]	5.29	0.9677
AT3G15800			Glycosyl hydrolase superfamily...		Potri.003G032600 [exp]	5.29	0.9707
AT3G15680			Ran BP2/NZF zinc finger-like s...		Potri.006G251300 [exp]	6.92	0.9598
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340500 [exp]	7.07	0.9665
AT2G34540			unknown protein		Potri.004G064900 [exp]	8.48	0.9665
AT3G17380			TRAF-like family protein (.1)		Potri.008G005300 [exp]	9.16	0.9685
AT1G54400			HSP20-like chaperones superfam...		Potri.019G037700 [exp]	9.94	0.9612
					Potri.008G018000 [exp]	10.19	0.9597

Compare expression of checked genes

Potri.005G022700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.