Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02330 572 / 0 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G02810 568 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47550 549 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10720 459 / 2e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) AT5G04970 458 / 1e-154 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26440 380 / 2e-125 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 380 / 8e-125 ATPME3 pectin methylesterase 3 (.1) AT1G53830 369 / 1e-120 ATPME2 pectin methylesterase 2 (.1) AT3G43270 366 / 3e-120 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 365 / 1e-119 ATPMEPCRA methylesterase PCR A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127000 [exp] 635 / 0 AT1G02810 712 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202600 [exp] 619 / 0 AT1G02810 749 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.008G011100 [exp] 492 / 1e-168 AT3G10720 744 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.010G247700 [exp] 476 / 2e-162 AT3G10720 746 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.002G202500 [exp] 419 / 2e-140 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051400 [exp] 406 / 3e-135 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.015G127700 [exp] 396 / 4e-132 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 397 / 1e-131 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.002G145500 [exp] 394 / 4e-131 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031470 [exp] 578 / 0 AT4G02330 573 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015210 [exp] 568 / 0 AT4G02330 556 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029866 [exp] 539 / 0 AT1G02810 511 / 6e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10010309 [exp] 517 / 2e-179 AT1G02810 575 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013416 [exp] 473 / 7e-162 AT1G02810 519 / 2e-180 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10028882 [exp] 463 / 3e-157 AT5G04970 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 398 / 1e-132 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008937 [exp] 398 / 2e-131 AT3G10720 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Lus10039314 [exp] 394 / 1e-130 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10009110 [exp] 389 / 3e-129 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.005G022800.1 pacid=42803185 polypeptide=Potri.005G022800.1.p locus=Potri.005G022800 ID=Potri.005G022800.1.v4.1 annot-version=v4.1 ATGCAAGATTACAAACAATTCAATGATCTGTATAAAGCTCCATTTCAACATTTCCATTCACAAAATCTTGTGTCAGCCATGGCTTCCAAGCTAATCACCT TATGCACAACCTCTCTCCTTCTCCTGCTCTTGTGTTCACCCTCTCTTGCAAATTACTCGTTTTCATCCATCTTTAATACACCAGAAACCATTTGTGAGAA CACACGTTTCCCCCATTTCTGCAAATCTTCTTTACCACATAATAAGCCTGGAACCATACATGACTATGCCAAGATTTCATTTCAACAATCTTTGTCCCAT GCTCAAAGGTTTCTTTGGCTTGTTCAACATTACTCAAGGCTTCCCTCAACACTGTACAAATCCACCATTCTTGCCCTTGAAGATTGCCTGTTCTTAGCTC AAGAAAACATAGACTACTTGTCATACGTAATGGAAACTTTAAAGTCTAGTGCTGATGATGCCCTTCAAGGCTACCAAGCTGAAGATTTACAAACCTTGCT TAGTGCAACTTTGACCAACCAGGAAACCTGCTTGGATGGGCTTCAATACAGATCATCATCCTCAAGCATCAAGAATGCCCTATTAGTCCCTATCTCGAAC GGAACCATGCACTATAGTGTTGCTCTTGCACTTTTTACTCGTGGTTGGGCTCATAGCACAATGAAAGGTAGATATTTAACCGAAAGAAAGCATGTGTTTT CTGACTTGGAAGATGGTGCAAGCAAAGGCTTGCCATTGATGATGTCAAGCAAGGATAAACAGATCTACGAGTCAGTAAGTGGAAGAAGAGTCCTTAAAAC ATCAAACCTTACTGGTGTCTTGGTGAGCAAAGTGGTGGTTGTGGATCCATATGGATCCGGGAAGTTTCGAACCATTACCGAAGCTGTAGCTGCTGCACCG AATAACACCTTTGCTAGCAATGGATATTATGTGATTTATGTGGTTGCCGGCGTCTATAAAGAGTACGTTTCCATACCAAAGAGCAAGAAATACCTGATGA TGATCGGAGCAGGTATTAACCAGACTGTGATTACTGGCAACCGAAGTGTAGATGATGGATGGACAACATTTAATTCAGCAACATTTGCTGTGCTTGGTCA AGGATTTGTTGCAGTGAACATAACGTTTCGGAACACGGCAGAAGCAATCAAGCACCAAGCTGTGGCAGTAAGAAGTGGAGCAGATATGTCCACATTTTAC AAATGCAGCTTTGAAGGTTACCAAGACACCTTATACACTCATTCTCTTAGGCAATTCTACAGAGATTGCGACATCTATGGCACGATCGATTACATATTCG GTAATGCTGCAGTTGTTCTTCAGAATTGCAATATCTATTCGCGATTACCCTTGGACAACCAGTTCAATACTCTGACTGCTCAAGGTCGGACTGATCCTAA CCAAAACACAGGCACTTCAATACAAAATTGTACCATCAAGGCGGCTAAGGACTTGGCCTCAAGTAATAGTTCAACAAAAACATACCTAGGCAGGCCATGG AAGGAATATTCAGTAACTGTTATCATGCAGTCTTTCATCGATAGCGTAATCGATCCGGCCGGTTGGTCCGCATGGTCAGGAGAGTTTGCACTTAGCACAC TTTATTATGCAGAATTCAATAACACTGGTCCTGGATCAAATACTACTAACAGGGTTCAATGGCCTGGTTATCATGTGATTAGTGGGACCGAGGCGGCTAA TTTCACCGTGTCCAACTTCATAGCAGGAGGTTTCTGGTTGCCAGGAACAGGAGTGCCTTACGTTGGTGGTTTACAGTGA
AA sequence Show only first row Show all	>Potri.005G022800.1 pacid=42803185 polypeptide=Potri.005G022800.1.p locus=Potri.005G022800 ID=Potri.005G022800.1.v4.1 annot-version=v4.1 MQDYKQFNDLYKAPFQHFHSQNLVSAMASKLITLCTTSLLLLLLCSPSLANYSFSSIFNTPETICENTRFPHFCKSSLPHNKPGTIHDYAKISFQQSLSH AQRFLWLVQHYSRLPSTLYKSTILALEDCLFLAQENIDYLSYVMETLKSSADDALQGYQAEDLQTLLSATLTNQETCLDGLQYRSSSSSIKNALLVPISN GTMHYSVALALFTRGWAHSTMKGRYLTERKHVFSDLEDGASKGLPLMMSSKDKQIYESVSGRRVLKTSNLTGVLVSKVVVVDPYGSGKFRTITEAVAAAP NNTFASNGYYVIYVVAGVYKEYVSIPKSKKYLMMIGAGINQTVITGNRSVDDGWTTFNSATFAVLGQGFVAVNITFRNTAEAIKHQAVAVRSGADMSTFY KCSFEGYQDTLYTHSLRQFYRDCDIYGTIDYIFGNAAVVLQNCNIYSRLPLDNQFNTLTAQGRTDPNQNTGTSIQNCTIKAAKDLASSNSSTKTYLGRPW KEYSVTVIMQSFIDSVIDPAGWSAWSGEFALSTLYYAEFNNTGPGSNTTNRVQWPGYHVISGTEAANFTVSNFIAGGFWLPGTGVPYVGGLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Potri.005G022800 [exp]	0	1
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.006G001600 [exp]	9.79	0.7098
					Potri.009G048602 [exp]	29.06	0.6717
AT3G05858			unknown protein		Potri.013G001800 [exp]	56.24	0.6702
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073541 [exp]	64.15	0.6549
AT5G36130			Cytochrome P450 superfamily pr...		Potri.003G222001 [exp]	75.21	0.6536
AT5G43580		UPI	UNUSUAL SERINE PROTEASE INHIBI...		Potri.011G110100 [exp]	104.18	0.6267
					Potri.005G232450 [exp]	110.01	0.6048
AT5G49290		ATRLP56	receptor like protein 56 (.1)		Potri.018G117954 [exp]	191.12	0.5880

Compare expression of checked genes

Potri.005G022800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.