Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PEF1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05610 593 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 578 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 518 / 3e-179 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 494 / 7e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26450 405 / 1e-134 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33230 394 / 4e-130 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 388 / 2e-128 ATPME2 pectin methylesterase 2 (.1) AT1G53840 387 / 5e-128 ATPME1 pectin methylesterase 1 (.1) AT5G04960 381 / 6e-126 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 382 / 8e-126 ATPME3 pectin methylesterase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G013400 [exp] 989 / 0 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 594 / 0 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 467 / 5e-159 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 452 / 6e-153 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021600 [exp] 439 / 2e-148 AT4G33230 484 / 1e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209000 [exp] 437 / 7e-148 AT4G33230 483 / 2e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021300 [exp] 431 / 4e-145 AT4G33230 459 / 5e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209200 [exp] 427 / 1e-143 AT5G49180 459 / 2e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.008G011200 [exp] 414 / 2e-138 AT3G10710 621 / 0.0 root hair specific 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006940 [exp] 520 / 5e-180 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033466 [exp] 508 / 5e-175 AT3G05610 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020909 [exp] 504 / 9e-174 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015211 [exp] 466 / 3e-157 AT3G05610 420 / 3e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031469 [exp] 461 / 1e-155 AT3G05610 442 / 4e-147 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029866 [exp] 456 / 6e-149 AT1G02810 511 / 6e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10037489 [exp] 436 / 1e-146 AT5G27870 480 / 3e-164 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039927 [exp] 427 / 1e-142 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018335 [exp] 397 / 1e-131 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 391 / 4e-129 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.005G022900.1 pacid=42803352 polypeptide=Potri.005G022900.1.p locus=Potri.005G022900 ID=Potri.005G022900.1.v4.1 annot-version=v4.1 ATGTCTTATGGGGATGATTCAAACAGAAAGAGGAGAATAGCCGTTATCGGCATCTCTTCTTTCCTCTTGGTAGCTATGGTTGTAGCTGTCTCCGTTGGCG TCGGTCTTGGGAATGACGGCAATGAGGACCTCAATGACAGCAATCATAAAAGCACTAATCAAGTATCTGCCTCCATGAAAGCCGTCAAGGCCATTTGCCA GCCCACAGATTACAGGAAAACATGTGAAGAAAACCTCCAAAAAGCTGCTGGAAACACCACAGATCCTAGAGAATTGATCAAGATGGCATTCAAGATTGCA GAGAAGCACGTTAATGAGGCTTCCAAGAAATCAAAGGTTTTGGAGGAACTCTCAAAGGACCCAAGAACCCGTGGGGCCCTTCAGAGCTGCAGAGAGCTTA TGACCATGTCGGTTGATGAGCTCAAGCAATCTCTTAACAAAGTAACAGATTTTGATATTACCGAGATAGAAAAATTGATGGCAGATGTTAAGACTTGGCT TAGTGCTTCCATCACATATCAAGAAACTTGCTTGGACGGATTCCAAAACACAACCACTAATGCTGGAAAGGAAATGAAGAAGGGATTGAAGCTTTCCATG GAGCTTAGCGCCAATCTCCTTGCCATCGTTTCCGGGATCTCTTCCGCAATCCCTTCATTGGAAAGTTTGGGCCAGCGCCGCCTTCTCCAAGATGATTTAC CTGTTCTTGGACATGGTGATCAAATATTCCCCACCTGGACTGACTTTGGAAAGCGCAGACTTCTGGCAGCGCCTGCTTCCAAGATTAAGGCTGACATTGT TGTGGCTAAGGATGGAAGTGGAGATTTCTCAACAATCAGAGACGCATTGCATCATGTTCCCATTAAGAGCAGCAAGACCTTTGTGTTATACATCAAGGCA GGAATTTATCAGGAGTACATTGATTTCAATAAGAGCATGACTAATTTGATGGTGATTGGAGATGGCAGGGAGACTACTCGCATCGTCGGAAACAAGAACT TCGTCGATGGAATCAACACCTATCACACCGCAACAGTCGTTGTCCTCGGAGATAACTTTGTGGCCAAGAATATTGGTTTCGAGAACAATGCTGGTGCCAT CAAACATCAAGCTGTGGCATTGAGAGTTTCGGCTGATTATGCTCTCTTCTACAACTGCTCAATGGACGGACACCAGGACACAATGTACACACACGCCAAG CGTCAATTCTACCGCGACTGCAGCATCTCCGGCACCATCGACTTCGTCTTTGGTGACGCTTCTGCAGTCTTCCAAAACTGCAAATTCTTGATCCGCAAGC CATTGGAAAACCAACAGTGCATTGTGACAGCTCAAGGCAGGAAAATGAGGAGGCAACCATCAGCTATTATCATCCAAAACAGCACAATCACAGCCCATCC TGACCTATTCCCTGAAAGGAAACTATTCAAGTCATATCTCGGCCGTCCATGGAAGGAATTCTCAAGAACAATCATCATGGAATCCTTCATTGACGATGTC ATCCAGCCCGAAGGATGGCTACCTTGGCTCGGAACTTTCGGACTCAAGACTTGTTGGTACACAGAATTCAACAACAATGGTCCTGGTTCTAGCAAGGCAG CTCGTGTGAAGTGGAATGGTATCAAGACCATCGATCGTCAACACGCCTTGGATTTCACACCAGGAAGGTTCTTCAAGGGCGGTGCCTGGATCAAGACTAC CGGAATCCCCTACACACCTTTCTTGGCCAGAAAATGA
AA sequence Show only first row Show all	>Potri.005G022900.1 pacid=42803352 polypeptide=Potri.005G022900.1.p locus=Potri.005G022900 ID=Potri.005G022900.1.v4.1 annot-version=v4.1 MSYGDDSNRKRRIAVIGISSFLLVAMVVAVSVGVGLGNDGNEDLNDSNHKSTNQVSASMKAVKAICQPTDYRKTCEENLQKAAGNTTDPRELIKMAFKIA EKHVNEASKKSKVLEELSKDPRTRGALQSCRELMTMSVDELKQSLNKVTDFDITEIEKLMADVKTWLSASITYQETCLDGFQNTTTNAGKEMKKGLKLSM ELSANLLAIVSGISSAIPSLESLGQRRLLQDDLPVLGHGDQIFPTWTDFGKRRLLAAPASKIKADIVVAKDGSGDFSTIRDALHHVPIKSSKTFVLYIKA GIYQEYIDFNKSMTNLMVIGDGRETTRIVGNKNFVDGINTYHTATVVVLGDNFVAKNIGFENNAGAIKHQAVALRVSADYALFYNCSMDGHQDTMYTHAK RQFYRDCSISGTIDFVFGDASAVFQNCKFLIRKPLENQQCIVTAQGRKMRRQPSAIIIQNSTITAHPDLFPERKLFKSYLGRPWKEFSRTIIMESFIDDV IQPEGWLPWLGTFGLKTCWYTEFNNNGPGSSKAARVKWNGIKTIDRQHALDFTPGRFFKGGAWIKTTGIPYTPFLARK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05610			Plant invertase/pectin methyle...		Potri.005G022900 [exp]	0	1	PEF1.2
AT2G26450			Plant invertase/pectin methyle...		Potri.018G051200 [exp]	4.00	0.7460
AT3G01570			Oleosin family protein (.1)		Potri.001G345800 [exp]	12.00	0.6470
AT5G28780			PIF1 helicase (.1)		Potri.001G185950 [exp]	13.00	0.6333
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.008G077700 [exp]	14.00	0.6701	Pt-PNFT3.4
AT2G31335			unknown protein		Potri.005G221200 [exp]	14.31	0.5296
AT5G44265			Bifunctional inhibitor/lipid-t...		Potri.007G138400 [exp]	16.58	0.6497
AT5G27470			seryl-tRNA synthetase / serine...		Potri.007G070501 [exp]	17.49	0.6171
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.005G169000 [exp]	18.76	0.5851
AT5G10820			Major facilitator superfamily ...		Potri.018G017400 [exp]	22.80	0.5964
AT4G25760		ATGDU2	glutamine dumper 2 (.1)		Potri.004G108560 [exp]	23.97	0.5831

Compare expression of checked genes

Potri.005G022900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.