Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPL18.12
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05590 320 / 2e-113 RPL18 ribosomal protein L18 (.1) AT5G27850 317 / 6e-112 Ribosomal protein L18e/L15 superfamily protein (.1) AT2G47570 216 / 6e-73 Ribosomal protein L18e/L15 superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202800 [exp] 339 / 7e-121 AT3G05590 340 / 3e-121 ribosomal protein L18 (.1) Potri.013G013600 [exp] 333 / 2e-118 AT3G05590 337 / 8e-120 ribosomal protein L18 (.1) Potri.014G127300 [exp] 332 / 4e-118 AT3G05590 334 / 8e-119 ribosomal protein L18 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029879 [exp] 325 / 2e-115 AT5G27850 330 / 3e-117 Ribosomal protein L18e/L15 superfamily protein (.1) Lus10015198 [exp] 324 / 8e-115 AT3G05590 333 / 2e-118 ribosomal protein L18 (.1) Lus10041264 [exp] 324 / 9e-115 AT5G27850 330 / 4e-117 Ribosomal protein L18e/L15 superfamily protein (.1) Lus10031485 [exp] 325 / 2e-112 AT3G05590 333 / 9e-116 ribosomal protein L18 (.1) Lus10020659 [exp] 322 / 2e-109 AT3G05580 562 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10021971 [exp] 319 / 4e-107 AT5G42390 629 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0588 [poplar] [flax] Ribos_L15p_L18e PF00828 [poplar] [flax] Ribosomal_L27A Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Representative CDS sequence Show only first row Show all	>Potri.005G023500.1 pacid=42804114 polypeptide=Potri.005G023500.1.p locus=Potri.005G023500 ID=Potri.005G023500.1.v4.1 annot-version=v4.1 ATGGGGATAGATTTGAAAAGAGGAGGTAAGTCCAAGAAGACCAAACGTACAGCTCCGAAGTCGGATGATATCTATCTTAAGCTTCTTGTTAAGCTGTACC GGTTTCTTGTGAGGAGAACTGGAAGCAGGTTCAATGCTGTGATATTGAAGAGGCTGTTTATGAGCAAGATTAACAAGGCCCCACTTTCTCTTTCTAGGCT TATTACATTCATGAAGGGAAAGGAGGACAAGATTGCTGTGCTTGTTGGGACAGTAACTGATGATATTAGAGTCTATGAGGTGCCTGCATTGAAAGTCACT GCTCTGAGGTTTACAGAGACAGCTAGGGCCAGGATTGAGAAGGCTGGAGGAGAGTGCTTGACATTTGATCAGCTTGCTTTGAGAGCTCCATTGGGACAGA ACACAGTTCTCCTCAGAGGTCCGAAGAATGCTCGTGAAGCTGTCAAACACTTTGGCCCAGCTCCAGGTGTGCCACACAGCCATACCAAACCATTTGTGCG CGCCAAGGGAAGGAAGTTTGAGAAAGCTAGAGGAAAGAGGAACAGTAGGGGCTTCAGGGTTTAA
AA sequence Show only first row Show all	>Potri.005G023500.1 pacid=42804114 polypeptide=Potri.005G023500.1.p locus=Potri.005G023500 ID=Potri.005G023500.1.v4.1 annot-version=v4.1 MGIDLKRGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSRFNAVILKRLFMSKINKAPLSLSRLITFMKGKEDKIAVLVGTVTDDIRVYEVPALKVT ALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPFVRAKGRKFEKARGKRNSRGFRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05590		RPL18	ribosomal protein L18 (.1)		Potri.005G023500 [exp]	0	1	Pt-RPL18.12
AT3G53740			Ribosomal protein L36e family ...		Potri.012G142600 [exp]	1.73	0.9571
AT1G26880			Ribosomal protein L34e superfa...		Potri.017G082200 [exp]	2.00	0.9549	Pt-RPL34.5
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Potri.001G131000 [exp]	4.47	0.9372	ATBBC1.2
AT1G57860			Translation protein SH3-like f...		Potri.006G195400 [exp]	5.19	0.9410
AT1G67430			Ribosomal protein L22p/L17e fa...		Potri.008G175500 [exp]	5.74	0.9280
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.009G090000 [exp]	7.34	0.9110
AT5G57290			60S acidic ribosomal protein f...		Potri.009G032600 [exp]	8.71	0.9380
AT5G27700			Ribosomal protein S21e (.1)		Potri.013G017600 [exp]	8.83	0.9368
AT4G36130			Ribosomal protein L2 family (....		Potri.007G013101 [exp]	9.16	0.9210
AT1G77750			Ribosomal protein S13/S18 fami...		Potri.002G088400 [exp]	10.09	0.8897

Compare expression of checked genes

Potri.005G023500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.