Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09150 306 / 7e-108 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G013700 [exp] 337 / 3e-120 AT1G09150 307 / 2e-108 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031485 [exp] 306 / 3e-105 AT3G05590 333 / 9e-116 ribosomal protein L18 (.1) Lus10015197 [exp] 300 / 2e-104 AT1G09150 314 / 5e-110 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (.1) Lus10041458 [exp] 48 / 2e-06 AT1G71350 810 / 0.0 eukaryotic translation initiation factor SUI1 family protein (.1) Lus10034314 [exp] 45 / 8e-06 AT1G71350 809 / 0.0 eukaryotic translation initiation factor SUI1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [poplar] [flax] PUA PF01472 [poplar] [flax] PUA PUA domain
Representative CDS sequence Show only first row Show all	>Potri.005G023600.2 pacid=42805690 polypeptide=Potri.005G023600.2.p locus=Potri.005G023600 ID=Potri.005G023600.2.v4.1 annot-version=v4.1 ATGTTCAAAAAGTTTTCAAGTGATGAAGTATCGTCACAAAACCAAGTGAAAGCATCAGTTCAACGCAAAATTCGACAAAGCATTGCTGATGAGTACCCAG GACTTGAACCAGTATTGGATGATTTTCTGCCAAAGAAATCGCCTTTAATTGTTGTTAAATGTCAGAATCATTTGAATCTGGTGGTGGTGAATAATGTGCC ATTGTTTTTTAATATAAGGGATGGACCTTACATGCCTACGCTCCGACTTCTTCATCAATATCCAAACATAATGAAAAAATTGCAAGTTGATAGGGGTGCA ATAAAATTTGTCCTTGCTGGTGCTAACATAATGTGTCCTGGACTTACATCTCCTGGTGGTGCACTAGATGATGAAGTGGATGCTGAAACTCCAGTGGCTA TAATGGCTGAAGGAAAGCAACATGCCCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATAAAGTCAATCAACAAGGGAATTGGCGTGGACAACAT GCATTATCTCAACGATGGTCTTTGGAAGATGGAGCGTTTAGATTGA
AA sequence Show only first row Show all	>Potri.005G023600.2 pacid=42805690 polypeptide=Potri.005G023600.2.p locus=Potri.005G023600 ID=Potri.005G023600.2.v4.1 annot-version=v4.1 MFKKFSSDEVSSQNQVKASVQRKIRQSIADEYPGLEPVLDDFLPKKSPLIVVKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGA IKFVLAGANIMCPGLTSPGGALDDEVDAETPVAIMAEGKQHALAIGFTKMSAKDIKSINKGIGVDNMHYLNDGLWKMERLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09150			pseudouridine synthase and arc...		Potri.005G023600 [exp]	0	1
AT3G14290		PAE2	20S proteasome alpha subunit E...		Potri.001G162900 [exp]	1.41	0.9515	Pt-PAE1.1
AT2G27020		PAG1	20S proteasome alpha subunit G...		Potri.009G020800 [exp]	1.41	0.9527	PAG1.2
AT1G65270			unknown protein		Potri.019G055100 [exp]	2.44	0.9432
AT3G14290		PAE2	20S proteasome alpha subunit E...		Potri.003G072500 [exp]	3.00	0.9283	PAE1.2
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Potri.015G122400 [exp]	3.87	0.9399
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Potri.013G051500 [exp]	4.00	0.9426
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Potri.014G069800 [exp]	4.24	0.9316	PBF1.2
AT2G46540			unknown protein		Potri.002G173101 [exp]	5.09	0.9079
AT1G45000			AAA-type ATPase family protein...		Potri.005G231700 [exp]	6.92	0.9313	RPT4.1
AT1G78870		UBC35 ,UBC13A	UBIQUITIN CONJUGATING ENZYME 1...		Potri.011G111400 [exp]	7.07	0.9280

Compare expression of checked genes

Potri.005G023600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.