Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06250 76 / 4e-14 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT2G43280 60 / 8e-10 FAR1_related Far-red impaired responsive (FAR1) family protein (.1) AT5G18960 61 / 3e-09 FAR1_related FRS12 FAR1-related sequence 12 (.1) AT4G12850 52 / 1e-07 FAR1_related Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) AT3G22170 55 / 2e-07 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT4G38180 54 / 3e-07 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT1G80010 53 / 5e-07 FAR1_related FRS8 FAR1-related sequence 8 (.1) AT3G59470 51 / 7e-07 FAR1_related Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) AT4G19990 52 / 2e-06 FAR1_related FRS1 FAR1-related sequence 1 (.1.2) AT2G32250 52 / 2e-06 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G029000 [exp] 81 / 2e-15 AT3G06250 1012 / 0.0 FAR1-related sequence 7 (.1) Potri.008G199300 [exp] 79 / 6e-15 AT3G06250 985 / 0.0 FAR1-related sequence 7 (.1) Potri.006G020600 [exp] 61 / 2e-09 AT4G15090 1078 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.007G128900 [exp] 59 / 3e-09 AT3G07500 154 / 2e-46 Far-red impaired responsive (FAR1) family protein (.1) Potri.007G129000 [exp] 57 / 3e-09 AT2G43280 133 / 9e-40 Far-red impaired responsive (FAR1) family protein (.1) Potri.007G128700 [exp] 57 / 6e-09 AT3G07500 138 / 2e-40 Far-red impaired responsive (FAR1) family protein (.1) Potri.003G031200 [exp] 59 / 9e-09 AT1G80010 726 / 0.0 FAR1-related sequence 8 (.1) Potri.006G020700 [exp] 59 / 1e-08 AT3G22170 1184 / 0.0 far-red elongated hypocotyls 3 (.1.2) Potri.005G257600 [exp] 59 / 1e-08 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G023700.2 pacid=42804181 polypeptide=Potri.005G023700.2.p locus=Potri.005G023700 ID=Potri.005G023700.2.v4.1 annot-version=v4.1 ATGGATGAGTTACTTCGTCTGAGTATTGGGGGTGCCGCAAATTCGGATGTAAATATCTCGGGTGGAGAAGCTGCTGGTCCCACGTCCTTGCCCGCGGATG GTGTTGATCGAAATTTGTTACAGCCACCGTATGATGGGCAGACTTTTGGTAGTTTAGAAGAAATGGTACAGTATTTGCAGTCGTATGCGAAGGCTATTGG GTTTCAATGGAGATATAGAACTTCAAGAAAGAATAAGAGCAATGGGGAAAGATGTGGTGTTCGTATGGTGTGCACTAAAGAAGGAACGAACAAGCCTCGA GGAAAGAGTCCCAAGTATTTTAGGCTTTCAGGGAGGGAAGGGTGTAATGTTGCCATGTCTTCTTCCTTGCAAAGTGATGGTCGGTGGAAGATTAGCAAAA TTCATTTGCAGCATTGTCATGAGATTGATTTGAATGCTGTACCGTTACATATGCGACAGCATCTATTAGAGTTGAATGATAGGTCGGGCATTGAGGAAGA AGAAGAAGAGGAAAATGAAGAAGAAGAGGAGGGGAAACCATATGATGGACAAACTTTTGGTAGTTATGCAGAACTGATTCAGTTCTTGTTTTCTTATGCC AAGAAAGTTGGATTTCAATGGAGCATCAGGACTTCAAGAAAGGATAAGAACAGCGGTAAAACTTGTGGTATCTGCATGGTATGTAGTAAAAGCAAGCGGA GAAAACAGCCAAATTCTGAGGGGGAGGGGTGTGACGTTTCACTATGTTCTACCTTGCAAAAGGATGGTCAGTGGAAGATCAACAAAATTCATTTGCGACA CTGTCATGAGATGGATCCAAATGCAACTCCCATTCTTCGGAGATGGTATCTACTAGCATTGAATGGTAGGATGGGTATCGAGGAAGAGGAAGCAAAGGAG GAGGGAGAAGAAATGGAGGAGGGGGGGGAGGGGGAGACAGAACAAGAAGAAGCTGGGAACTCGTCTTTGTCCAATGATATTGATCGTCCTTCTATTGATC CACTGTATAATGGACAGACTTTTGGTAGTTTACAAGAACTGATTCAGTATTTGTGCTCTTATGCAAAGGCTGTCGGATTTGAATGGAGGAAGAGAACTTC AAGAAAGAACGAGAACAGTGGTGAAATATGTGGTGTTCGCATGGTATGCAATAAAGAGGGAAAACGAGGTTCTTTGGGACCATCAATGAAAAAGGGGTGT CCTGTTGCTGTAAATTCTACCTTGCAGAAGGGTGGTCGGTGGAGGATCAACAAAATAAATTTGGAGCACTCTCATGAGATTGATCCGAATGTAAGACCAT TCCTTCGGCGGCGACATAGATCTATTCCTCCTCAATTGCGGGATCCCCTGGTGTCAAATGATAGGTTGGGTATTGAGGATGAAGAAGAAAGGGAAGAGGA GGAGGAGGACGAAGGAGCTGTACCTGTTGCCTTGGAGCAACCTCTAGACTCAAGTGGTGATGAGTATGATTCACCTTCAATAAATGATGCAATAATGGAA GAGCAACCATCCTTTGAATCTTCCTTTAACCAGCAGGATGCCATTGATGAAAGGGGCACCACTTGTCAAAACAGCCCTGACCTGGCTGGAAATGTTGGAC AGCATTGGAAGAAGCTGAAAAGAGATATGGGCAAATTGACGACGTCCAATTCAGACAATATTAGGCAATTGAGCAATATGGAGAGAACTGTTGATGTTCT GATCAGTCAATATTTTGGGGATGATGTAAACACCACTCTTCAAGATGTGAGGAAATTAATCACTGGACACAAGAACAAGGTCTTTCATCTAAGGTCTTCA AAAAAATCTGCTCAAGCTGAATGCAAGAATCTTTACAGAGAGAATCCTGATTTATCAGCAACAATTGACAGAGCAAAACTAGCGTTACAAGCGGAAGAGT CAAAGCTATCTCAGCTCACAGGTGAAGAAGCTAGAATCGAAGCGGCAATCCAAAACTTAATGGCAAAAAAACAATCAGTTCTTTCGCAGAAAGCCTCAGC TGCAAAGAATATTGAGAAGGAAAACCAGAAAATGGAAGAGTTGAAGAACACACAAGAAAAGATCAACAAAGCAGAAAACAGTTTTCGCAAATGGCAGAAA GAAACGAGTTACGCTAACTCTACTTTCATTTCAAATTTGATGGATTCCAAGAGGGTGTTGTTCAAGTGA
AA sequence Show only first row Show all	>Potri.005G023700.2 pacid=42804181 polypeptide=Potri.005G023700.2.p locus=Potri.005G023700 ID=Potri.005G023700.2.v4.1 annot-version=v4.1 MDELLRLSIGGAANSDVNISGGEAAGPTSLPADGVDRNLLQPPYDGQTFGSLEEMVQYLQSYAKAIGFQWRYRTSRKNKSNGERCGVRMVCTKEGTNKPR GKSPKYFRLSGREGCNVAMSSSLQSDGRWKISKIHLQHCHEIDLNAVPLHMRQHLLELNDRSGIEEEEEEENEEEEEGKPYDGQTFGSYAELIQFLFSYA KKVGFQWSIRTSRKDKNSGKTCGICMVCSKSKRRKQPNSEGEGCDVSLCSTLQKDGQWKINKIHLRHCHEMDPNATPILRRWYLLALNGRMGIEEEEAKE EGEEMEEGGEGETEQEEAGNSSLSNDIDRPSIDPLYNGQTFGSLQELIQYLCSYAKAVGFEWRKRTSRKNENSGEICGVRMVCNKEGKRGSLGPSMKKGC PVAVNSTLQKGGRWRINKINLEHSHEIDPNVRPFLRRRHRSIPPQLRDPLVSNDRLGIEDEEEREEEEEDEGAVPVALEQPLDSSGDEYDSPSINDAIME EQPSFESSFNQQDAIDERGTTCQNSPDLAGNVGQHWKKLKRDMGKLTTSNSDNIRQLSNMERTVDVLISQYFGDDVNTTLQDVRKLITGHKNKVFHLRSS KKSAQAECKNLYRENPDLSATIDRAKLALQAEESKLSQLTGEEARIEAAIQNLMAKKQSVLSQKASAAKNIEKENQKMEELKNTQEKINKAENSFRKWQK ETSYANSTFISNLMDSKRVLFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06250	FAR1_related	FRS7	FAR1-related sequence 7 (.1)		Potri.005G023700 [exp]	0	1
AT1G06230		GTE4	global transcription factor gr...		Potri.019G090700 [exp]	3.00	0.8860
AT5G05230			RING/U-box superfamily protein...		Potri.019G058300 [exp]	5.65	0.8230
AT5G41950			Tetratricopeptide repeat (TPR)...		Potri.011G050600 [exp]	10.19	0.8090
AT1G06230		GTE4	global transcription factor gr...		Potri.013G118900 [exp]	11.40	0.8702
					Potri.001G318600 [exp]	11.83	0.8153
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Potri.004G196400 [exp]	12.60	0.8652
AT4G11560			bromo-adjacent homology (BAH) ...		Potri.003G127400 [exp]	14.42	0.8406
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.012G077700 [exp]	15.16	0.8523
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.005G026800 [exp]	16.61	0.8578
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Potri.001G026000 [exp]	16.97	0.8197

Compare expression of checked genes

Potri.005G023700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.