Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02816 186 / 1e-60 Protein of unknown function, DUF538 (.1) AT4G02370 184 / 7e-60 Protein of unknown function, DUF538 (.1) AT4G02360 154 / 5e-48 Protein of unknown function, DUF538 (.1) AT1G02813 126 / 3e-37 Protein of unknown function, DUF538 (.1) AT5G19590 89 / 2e-22 Protein of unknown function, DUF538 (.1) AT5G19860 78 / 4e-18 Protein of unknown function, DUF538 (.1) AT5G16380 72 / 1e-15 Protein of unknown function, DUF538 (.1) AT3G07470 69 / 1e-14 Protein of unknown function, DUF538 (.1) AT5G37070 65 / 3e-13 Protein of unknown function, DUF538 (.1) AT3G07460 63 / 2e-12 Protein of unknown function, DUF538 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G014600 [exp] 271 / 4e-94 AT1G02816 181 / 8e-59 Protein of unknown function, DUF538 (.1) Potri.014G127600 [exp] 215 / 4e-71 AT1G02816 206 / 4e-68 Protein of unknown function, DUF538 (.1) Potri.002G203400 [exp] 204 / 7e-68 AT1G02816 211 / 6e-71 Protein of unknown function, DUF538 (.1) Potri.014G127500 [exp] 160 / 2e-50 AT4G02370 167 / 1e-53 Protein of unknown function, DUF538 (.1) Potri.006G158952 [exp] 97 / 7e-26 AT5G19590 201 / 3e-67 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 76 / 4e-17 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1) Potri.001G008400 [exp] 71 / 1e-15 AT5G19860 205 / 5e-68 Protein of unknown function, DUF538 (.1) Potri.002G238900 [exp] 69 / 1e-14 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.010G162400 [exp] 64 / 6e-13 AT2G03350 277 / 1e-96 Protein of unknown function, DUF538 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009854 [exp] 184 / 8e-60 AT1G02816 184 / 3e-60 Protein of unknown function, DUF538 (.1) Lus10010297 [exp] 184 / 1e-59 AT1G02816 184 / 4e-60 Protein of unknown function, DUF538 (.1) Lus10009855 [exp] 154 / 5e-48 AT1G02816 169 / 2e-54 Protein of unknown function, DUF538 (.1) Lus10017733 [exp] 97 / 1e-25 AT5G19590 189 / 8e-63 Protein of unknown function, DUF538 (.1) Lus10033088 [exp] 96 / 4e-25 AT5G19590 189 / 2e-62 Protein of unknown function, DUF538 (.1) Lus10013752 [exp] 77 / 1e-17 AT5G19860 194 / 1e-63 Protein of unknown function, DUF538 (.1) Lus10039187 [exp] 76 / 2e-17 AT5G19860 190 / 4e-62 Protein of unknown function, DUF538 (.1) Lus10039182 [exp] 71 / 1e-15 AT1G55265 135 / 1e-40 Protein of unknown function, DUF538 (.1) Lus10012498 [exp] 70 / 2e-15 AT3G08890 214 / 1e-72 Protein of unknown function, DUF538 (.1.2) Lus10022674 [exp] 71 / 4e-15 AT3G08890 273 / 1e-94 Protein of unknown function, DUF538 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [poplar] [flax] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Potri.005G024000.1 pacid=42804533 polypeptide=Potri.005G024000.1.p locus=Potri.005G024000 ID=Potri.005G024000.1.v4.1 annot-version=v4.1 ATGAACAAACCCTCTTTTAAACAACACAAAACAAGCAACCAAGAAGAACTCCAAGGAAAGATGGCGTCATCATACACAACTCTTTGCCTCATTCTCATAC TCTCACAGTCTTTACCATCATCATCTTCATCCCAAGAAACAAGTTTTCTTGATCAAAAACCAACAGCCTATGAAATCTTGGGAGACTACAACTTCCCTAA AGGACTGCTTCCTAAAGGAGTTGTCGGTTATTCTCTTGACACCACAACAGGTAGATTCTCTGCTTTCTTGAATGGTTCTTGCAGTTTTTCTCTTGAAGGA TCATACCAGTTAAGGTACAAGTCAAGCGTCAATGGTTATATATCACAAGGGAGACTCTCAAGGTTGGAAGGTGTGAGTGTGAAGGTGTTTTTTATGTGGG TTGATATTGTTGAGGTTTTAAGAAACGGTGATGATCTTGAATTCTCTGTTGGGATTGCTGGTGCTGGTTTTCCTATTGATAATTTTGAAGAGTGTCCTCA ATGCGGTTGTGGTTTGAATTGTAGTGGTGCTAAAAGGAAAGTAAGCAAGATTAGATCAAACCCTTTTGTATCTTCTTCTTAG
AA sequence Show only first row Show all	>Potri.005G024000.1 pacid=42804533 polypeptide=Potri.005G024000.1.p locus=Potri.005G024000 ID=Potri.005G024000.1.v4.1 annot-version=v4.1 MNKPSFKQHKTSNQEELQGKMASSYTTLCLILILSQSLPSSSSSQETSFLDQKPTAYEILGDYNFPKGLLPKGVVGYSLDTTTGRFSAFLNGSCSFSLEG SYQLRYKSSVNGYISQGRLSRLEGVSVKVFFMWVDIVEVLRNGDDLEFSVGIAGAGFPIDNFEECPQCGCGLNCSGAKRKVSKIRSNPFVSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02816			Protein of unknown function, D...		Potri.005G024000 [exp]	0	1
AT3G06840			unknown protein		Potri.001G162100 [exp]	6.08	0.8764
AT4G22250			RING/U-box superfamily protein...		Potri.014G158900 [exp]	19.94	0.8574
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.003G034300 [exp]	20.29	0.7555	Pt-ATB.2
AT3G20560		ATPDI12, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.001G419300 [exp]	21.63	0.8385
AT2G39960			Microsomal signal peptidase 25...		Potri.010G192700 [exp]	21.77	0.8569
AT1G71900			Protein of unknown function (D...		Potri.013G114100 [exp]	27.34	0.8279
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.001G120300 [exp]	27.85	0.8538	SKU5.2
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Potri.010G191100 [exp]	28.46	0.8030	Pt-SYP31.1
AT2G39960			Microsomal signal peptidase 25...		Potri.008G064700 [exp]	30.49	0.8253
AT4G34960			Cyclophilin-like peptidyl-prol...		Potri.004G173500 [exp]	34.98	0.8235

Compare expression of checked genes

Potri.005G024000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.