Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03980 275 / 1e-90 SGNH hydrolase-type esterase superfamily protein (.1) AT1G31550 275 / 2e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28580 272 / 2e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28570 270 / 2e-87 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G28600 268 / 1e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28640 259 / 1e-83 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28610 259 / 2e-83 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28650 258 / 5e-83 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28590 256 / 3e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28670 249 / 1e-79 ARAB-1 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G024900 [exp] 465 / 1e-164 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024966 [exp] 465 / 1e-164 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G025000 [exp] 465 / 1e-164 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024933 [exp] 465 / 2e-164 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.013G015200 [exp] 328 / 1e-110 AT1G28590 213 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G463900 [exp] 311 / 4e-104 AT1G28650 228 / 3e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G225100 [exp] 283 / 1e-92 AT1G28640 177 / 8e-52 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G054400 [exp] 276 / 2e-90 AT5G45910 377 / 8e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G054300 [exp] 258 / 4e-83 AT1G28590 388 / 1e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020657 [exp] 419 / 1e-140 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013938 [exp] 241 / 2e-76 AT1G28590 367 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000523 [exp] 232 / 6e-73 AT1G28590 363 / 6e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10024085 [exp] 211 / 6e-65 AT1G31550 321 / 3e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10010208 [exp] 204 / 2e-62 AT1G28610 267 / 1e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10015476 [exp] 208 / 3e-62 AT1G28600 315 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10034763 [exp] 197 / 2e-59 AT3G48460 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002389 [exp] 194 / 2e-58 AT3G48460 145 / 3e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011338 [exp] 192 / 3e-58 AT1G28600 177 / 3e-53 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10033302 [exp] 182 / 3e-53 AT3G48460 454 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.005G024300.1 pacid=42802325 polypeptide=Potri.005G024300.1.p locus=Potri.005G024300 ID=Potri.005G024300.1.v4.1 annot-version=v4.1 ATGGCTAACAGTAAAATTATTATAGCTTCGGTCCTGATTAGTTTTCTCTTCCTTGTAGCAGTGCTCCCTTACGCATCCAATGCAAAATCTCTGAAATCTT GTGGGTTTGATGCAATTTATCAGCTTGGTGATTCGATATCGGACACTGGCAATTTCATCCAGGAGAAACCTTCATCTGTGTATGCTAGGTTTCCTTATGG CGAAACTTTTTTCAACAAACCTACCGGCAGATGCTCAAATGGGAGGCTGATGATTGATTTTATCGCAAGTTCAGCAGGTGTTCCATTTCTTGATGCTCAC TTGAATCCAAATGGAACATTCACTCGCGGCCATGGAGTGAATTTTGCAGTTGCTAGCTCGACTGCCTTGCCAGCAGATATTCTATCGAAAAAGAACATCT TTCCTCCTACTCATAGTTCTCTTAGTGTACAACTTGACTGGATGTTCTCTTATTTCAATTCAATTTGTTTCAATGAGCAAGATTGTGCTGAAAAACTTAA AAACTCCCTCTTCATGGTCGGAGAGATTGGAGTCAATGACTATACCTATGCTTTTTTCCAAGGCAAAATCATGGAGGAGGTAAAAAACATGGTGCCTGAT GTTGTTCAAGCCATCAAAGATGCCGTGACGAGAGTTATTGGTTATGGCGCTAGACGCGTGGTTGTCCCTGGAAATGTCCCAATAGGTTGTTTTCCAATCT ATCTTACTGGATTTCAGACCAACAATACCGATGCCTACGACAAATTTCACTGCCTGAAAGGACTTAACAACCTCTCTGCTTCCCACAATGATCATCTCCA ACAAGCCATAGAAGAATTGAAGAAGGAAAACCCTAATGTGCTCATTGCATATGCTGATTATTACAACGCATTCCAATGGATTCTTACCAAAGCTCCAAAC CTTGGTTTTGATGCCAAATCTGTTCAGAAGGCTTGTTGTGGGACTGGCGGTGATTATGGTTTCAATGCCTTGAAAATGTGTGGAACTCCTGGTGTGCCAG TTTGCCCCGAACCTGATCGGTATATCAGCTGGGACGGAGTTCAGTTGACCGAAAAGGCATACCAATACATGGCATTGTGGATCATTGATGACATCTTACC AAAGCTTCAATGCCCTGCCTGA
AA sequence Show only first row Show all	>Potri.005G024300.1 pacid=42802325 polypeptide=Potri.005G024300.1.p locus=Potri.005G024300 ID=Potri.005G024300.1.v4.1 annot-version=v4.1 MANSKIIIASVLISFLFLVAVLPYASNAKSLKSCGFDAIYQLGDSISDTGNFIQEKPSSVYARFPYGETFFNKPTGRCSNGRLMIDFIASSAGVPFLDAH LNPNGTFTRGHGVNFAVASSTALPADILSKKNIFPPTHSSLSVQLDWMFSYFNSICFNEQDCAEKLKNSLFMVGEIGVNDYTYAFFQGKIMEEVKNMVPD VVQAIKDAVTRVIGYGARRVVVPGNVPIGCFPIYLTGFQTNNTDAYDKFHCLKGLNNLSASHNDHLQQAIEELKKENPNVLIAYADYYNAFQWILTKAPN LGFDAKSVQKACCGTGGDYGFNALKMCGTPGVPVCPEPDRYISWDGVQLTEKAYQYMALWIIDDILPKLQCPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03980			SGNH hydrolase-type esterase s...		Potri.005G024300 [exp]	0	1
AT2G43890			Pectin lyase-like superfamily ...		Potri.017G006500 [exp]	14.07	0.7170
AT2G43890			Pectin lyase-like superfamily ...		Potri.017G006700 [exp]	14.83	0.7456
AT5G08560			transducin family protein / WD...		Potri.010G254300 [exp]	14.96	0.7658
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Potri.015G008300 [exp]	21.00	0.7689
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.006G022800 [exp]	28.00	0.7233
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184600 [exp]	28.24	0.7560
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184400 [exp]	28.77	0.7480
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Potri.001G473200 [exp]	29.79	0.7595
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G183500 [exp]	37.22	0.7443
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182500 [exp]	38.20	0.7199

Compare expression of checked genes

Potri.005G024300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.