Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05560 175 / 7e-58 Ribosomal L22e protein family (.1.2.3) AT5G27770 151 / 2e-48 Ribosomal L22e protein family (.1) AT1G02830 127 / 5e-39 Ribosomal L22e protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G204100 [exp] 183 / 6e-61 AT3G05560 172 / 8e-57 Ribosomal L22e protein family (.1.2.3) Potri.013G015300 [exp] 182 / 7e-61 AT3G05560 172 / 1e-56 Ribosomal L22e protein family (.1.2.3) Potri.014G128800 [exp] 180 / 7e-60 AT3G05560 173 / 2e-57 Ribosomal L22e protein family (.1.2.3) Potri.010G012700 [exp] 176 / 3e-58 AT3G05560 170 / 8e-56 Ribosomal L22e protein family (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037498 [exp] 180 / 7e-60 AT3G05560 197 / 1e-66 Ribosomal L22e protein family (.1.2.3) Lus10006509 [exp] 179 / 2e-59 AT3G05560 196 / 3e-66 Ribosomal L22e protein family (.1.2.3) Lus10026555 [exp] 107 / 1e-31 AT3G05560 118 / 3e-36 Ribosomal L22e protein family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01776 [poplar] [flax] Ribosomal_L22e Ribosomal L22e protein family
Representative CDS sequence Show only first row Show all	>Potri.005G024400.1 pacid=42804173 polypeptide=Potri.005G024400.1.p locus=Potri.005G024400 ID=Potri.005G024400.1.v4.1 annot-version=v4.1 ATGAGTAAGGCAACAGCATCAGGAGCCAAAGGGAAGAAGAAAGGTGTAACCTTCACGGTAGATTGTACAAAGCCAGTGGAGGACAAGATTATGGACATTG CGTCATTGGAGAAGTTTCTTCAAGAGAGGATCAAAGTTGGAGGCAAAGCTGGTGCTCTCGGTGACACCGTTACTGTTACACGTGAAAAGAGCAAGATTAC TGTCACTTCTGACAGTAACTTCTCCAAAAGGTATCTGAAGTACTTGACAAAGAAGTATTTGAAGAAACACAATGTTAGGGATTGGCTACGAGTGATTTCA TCCAACAAAGATCGCAATGTTTATGAGTTGAGATACTTCAACATTGCTGAGAACGAGGGAGAGGAAGAAGACTGA
AA sequence Show only first row Show all	>Potri.005G024400.1 pacid=42804173 polypeptide=Potri.005G024400.1.p locus=Potri.005G024400 ID=Potri.005G024400.1.v4.1 annot-version=v4.1 MSKATASGAKGKKKGVTFTVDCTKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIS SNKDRNVYELRYFNIAENEGEEED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05560			Ribosomal L22e protein family ...		Potri.005G024400 [exp]	0	1
AT4G18100			Ribosomal protein L32e (.1)		Potri.014G191000 [exp]	2.44	0.9096
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Potri.014G115100 [exp]	5.47	0.9083	Pt-UBI.3
AT2G37190			Ribosomal protein L11 family p...		Potri.018G145200 [exp]	6.48	0.9086
AT3G16780			Ribosomal protein L19e family ...		Potri.015G029500 [exp]	7.74	0.8995
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.005G162600 [exp]	8.06	0.8489
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Potri.001G046600 [exp]	9.74	0.8403
AT1G20580			Small nuclear ribonucleoprotei...		Potri.002G010200 [exp]	11.83	0.8297
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Potri.002G190000 [exp]	13.22	0.8650
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.013G128600 [exp]	14.00	0.8472
AT1G07070			Ribosomal protein L35Ae family...		Potri.010G194200 [exp]	14.14	0.8633

Compare expression of checked genes

Potri.005G024400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.