Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05545 256 / 7e-81 RING/U-box superfamily protein (.1) AT2G47700 186 / 7e-55 RFI2 RED AND FAR-RED INSENSITIVE 2, RING/U-box superfamily protein (.1) AT4G13490 87 / 2e-19 RING/U-box superfamily protein (.1) AT2G15260 82 / 9e-17 RING/U-box superfamily protein (.1) AT2G38970 42 / 0.0006 Zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G015600 [exp] 641 / 0 AT3G05545 291 / 1e-94 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020655 [exp] 418 / 1e-144 AT3G05545 262 / 1e-83 RING/U-box superfamily protein (.1) Lus10029886 [exp] 407 / 5e-140 AT3G05545 258 / 2e-82 RING/U-box superfamily protein (.1) Lus10031491 [exp] 264 / 2e-84 AT3G05545 219 / 4e-67 RING/U-box superfamily protein (.1) Lus10040413 [exp] 42 / 0.0007 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10023527 [exp] 42 / 0.0007 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.005G024700.1 pacid=42802771 polypeptide=Potri.005G024700.1.p locus=Potri.005G024700 ID=Potri.005G024700.1.v4.1 annot-version=v4.1 ATGGGATTGGGGAACAGTGGGAATGATGTGATTGTGGATGATGGAGGTGGTGGTGGTGGAGGAGGATTAAATGGCAAGTCGTTTGGAGGGTCAGTTTCGT GTTCGATTTGTCTTGAAGTGGTAACTGATAATGGGGATCGATCATGGGCTAAGCTTCAATGTGGACACCAGTTTCATCTGGATTGCATCGGTTCAGCATT TAATGTAAAGGGTGCAATGCAATGCCCTAATTGTCGGAAAATTGAGAAGGGTCAATGGCTCTATGCAAATGGCTGTCGTTCACTGCCAGAATTTACCATG GATGACTGGGCACATGATGAGGACCTTTATGACTTAAGTTACTCTGAAATGTCCTTTGGAGTTCATTGGTGTCCATTTGGTAGCCTAGCACGATTGCCTT CATCCTTTGAGGAAGGAGAATTTCCATCAAACGCATATCACGATCTATTAGGGCATGCCATATTTGCCGAACATACTGCAGCAGTATCATCTGCTACTCA TCAATGCCCATATATTGCTTATTTTGGACCAATTCACCCTTCATCTTCAAATGCCAGTGTCAGTGTTTCAGATGGTTCTAGTTTTAACAATCACTGGAAT GGCCCATCAGTACCTAGTGAGATCCCTAGTTCCTATGCTTTTCCTGCCATGGATATCCATTATCACAGTTGGGAGCACCATTCTCCTCCCTTCTCAACAA CAGGCAATCGAATAGGTAATGCAGATCAACCTTCAGTTCCACCTGTTACTCAAAGGTCAGCTAGAACTAGTTCAGATCTTCCACCAAGGTCAGGATCTTT AATGCATCCATTCCTTGTTGGTCATAGTTCTAGTGCTAGAGCTGGGAGTTCAGTCGCATCCTCAATGATTCCACCTTACCAAGGCAGCAATGCACGGGCA CGTGATAGAGTTCAAGCCCTCCAGGCATACTACCAACAACAACAGCCTGGAAATTCTCCGCCCATTCACACGCCAGTTGTTTCTGGAAGCCGAAGATCCA GCAGTCATAGAGGCTTGCCTCAAGTAGGAACGGTTGCCTCAACATCCGATCAGACTGGCTTCTATTTCATCCCATCAGGAGCATCAAGTCGGAACTTCCA AGAAGCAGAAAATCCTCCTCCAACTCGATTTCGTTCATGGGAAAGTCACTTGCCACCATTCTCAGTAAGTCAGGTTGACAGAGATTCAGGTAGGAGCACA TTCCATCAGGCTGGTGGCGGTTCAGATCCCAGCATCAGATCTGGCAGCTTCCGCCAAAGGCATGGATCCGAGAGAATGTCATCACAAAATCGGTGA
AA sequence Show only first row Show all	>Potri.005G024700.1 pacid=42802771 polypeptide=Potri.005G024700.1.p locus=Potri.005G024700 ID=Potri.005G024700.1.v4.1 annot-version=v4.1 MGLGNSGNDVIVDDGGGGGGGGLNGKSFGGSVSCSICLEVVTDNGDRSWAKLQCGHQFHLDCIGSAFNVKGAMQCPNCRKIEKGQWLYANGCRSLPEFTM DDWAHDEDLYDLSYSEMSFGVHWCPFGSLARLPSSFEEGEFPSNAYHDLLGHAIFAEHTAAVSSATHQCPYIAYFGPIHPSSSNASVSVSDGSSFNNHWN GPSVPSEIPSSYAFPAMDIHYHSWEHHSPPFSTTGNRIGNADQPSVPPVTQRSARTSSDLPPRSGSLMHPFLVGHSSSARAGSSVASSMIPPYQGSNARA RDRVQALQAYYQQQQPGNSPPIHTPVVSGSRRSSSHRGLPQVGTVASTSDQTGFYFIPSGASSRNFQEAENPPPTRFRSWESHLPPFSVSQVDRDSGRST FHQAGGGSDPSIRSGSFRQRHGSERMSSQNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05545			RING/U-box superfamily protein...		Potri.005G024700 [exp]	0	1
AT5G57330			Galactose mutarotase-like supe...		Potri.006G165400 [exp]	3.00	0.8947
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.004G219100 [exp]	8.77	0.8643
AT1G10650			SBP (S-ribonuclease binding pr...		Potri.010G042200 [exp]	8.94	0.8874
AT2G47500			P-loop nucleoside triphosphate...		Potri.014G125700 [exp]	11.13	0.8704
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.011G068800 [exp]	12.64	0.8681
AT3G03210			unknown protein		Potri.017G139800 [exp]	15.00	0.8819
AT5G03110			unknown protein		Potri.016G086900 [exp]	15.68	0.8666
AT5G09400		KUP7	K+ uptake permease 7, K+ uptak...		Potri.003G023900 [exp]	23.45	0.8543	Pt-KUP7.2
					Potri.001G022601 [exp]	25.63	0.8596
AT4G14290			alpha/beta-Hydrolases superfam...		Potri.010G029200 [exp]	28.42	0.7882

Compare expression of checked genes

Potri.005G024700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.