Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) AT1G28580 233 / 3e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28590 231 / 1e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28640 230 / 4e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28570 228 / 3e-71 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G28650 228 / 3e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28670 227 / 6e-71 ARAB-1 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28610 224 / 7e-70 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28600 224 / 8e-70 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G45910 217 / 2e-67 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G024966 [exp] 696 / 0 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G025000 [exp] 696 / 0 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024900 [exp] 630 / 0 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024300 [exp] 428 / 6e-150 AT5G03980 275 / 1e-90 SGNH hydrolase-type esterase superfamily protein (.1) Potri.013G015200 [exp] 303 / 6e-101 AT1G28590 213 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G225100 [exp] 280 / 1e-91 AT1G28640 177 / 8e-52 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G463900 [exp] 271 / 3e-88 AT1G28650 228 / 3e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G054400 [exp] 233 / 9e-74 AT5G45910 377 / 8e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G054300 [exp] 229 / 9e-72 AT1G28590 388 / 1e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020657 [exp] 331 / 9e-107 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000523 [exp] 211 / 6e-65 AT1G28590 363 / 6e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015476 [exp] 211 / 2e-63 AT1G28600 315 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10013938 [exp] 201 / 6e-61 AT1G28590 367 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10024085 [exp] 184 / 2e-54 AT1G31550 321 / 3e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10011338 [exp] 181 / 7e-54 AT1G28600 177 / 3e-53 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10010208 [exp] 181 / 2e-53 AT1G28610 267 / 1e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10034763 [exp] 176 / 3e-51 AT3G48460 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10019947 [exp] 160 / 5e-46 AT1G28580 300 / 5e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10002389 [exp] 160 / 1e-45 AT3G48460 145 / 3e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.005G024933.1 pacid=42804285 polypeptide=Potri.005G024933.1.p locus=Potri.005G024933 ID=Potri.005G024933.1.v4.1 annot-version=v4.1 ATGGCTACCAGCAACGTTGTTTGTGCTTTAGTTCTTTCCTCTCTGTTCCATTTTCTTCTTGTTCCTGTATCAAGTCGTGAAGTCAATGTTCTTAAAAAAT GTGGGTTTAAAGCAATTTATCAGCTTGGGGATTCTATAGCTGACACTGGCAATTTGATTCGCGAAAATCCTCTTTCTCCATATGCTTCATTTCCTTATGG TTTGAAACTCTCGAAGCCAACAGGCAGATGCTCCAATGGGTTGTTGATGATTGATTACATTGCACGCTCGGCTAAACTTCCCTGTCCTGGTGCCTACTTG AATTCGGCAAGAAAATTTTCCGGTGGCCGCGGTGGAGTGAATTTTGCAGTTGCTGGTTCAACTGCCTTGCCTGCAGAAGTTTTATCGTCGAAGAATATAA TGAACATTGTGACAAATGAATCTCTTAGCACGCAACTTGAGTGGATGTTCTCCTATTTTAACACAACATGTTCCAAAGATTGTGCTAAAGAAATTAAATC ATCTCTCTTCATGGTTGGGGAGATTGGAGGCAATGACTATAACTATGCTTTCATGTTTAACAAGACCACTGAAGAAATAAGTGCCTTGGTTCCCGAAGTT GTCAGAGCTATAAAGGATGCTGTTGCGAGAGCCATTGGTCGCGGTGCTAGACGAGTGGTTGTCCCCGGAAACTTCCCGATAGGTTGCTTCCCGGTTTATC TTAGCCAATTCCACCCCAATGATGCTGCTGCTTATGATGAGTTCCACTGCCTCAAGGGGTTAAACTCTTTGGCAAGTTATCACAATGAGCTTCTCAAGCA AACCGTTGAGGGATTGAAAACAAATTACCCTGATGTGATCATAGTTTACGGTGACTATTACAAAGCATTCATGTCGATCTATCAGAACGCTCAGTCTCTT GGTTTTGATACGAAGTCGATGCAAAAGGCTTGCTGTGGGACTGGTGGTGATCATAATTTTAGCCTGATGAGAATGTGTGGAGCTCCTGACGTTCCGGTTT GTCCAAAGCCTGATCAATACATCAGCTGGGATGGAGTTCATTTGACACAAAAGGCTTATCAACACATGGCAGAATGGCTTATCAACGATATCTTTCCAAA GCTTCAATGCAGTGCTTGA
AA sequence Show only first row Show all	>Potri.005G024933.1 pacid=42804285 polypeptide=Potri.005G024933.1.p locus=Potri.005G024933 ID=Potri.005G024933.1.v4.1 annot-version=v4.1 MATSNVVCALVLSSLFHFLLVPVSSREVNVLKKCGFKAIYQLGDSIADTGNLIRENPLSPYASFPYGLKLSKPTGRCSNGLLMIDYIARSAKLPCPGAYL NSARKFSGGRGGVNFAVAGSTALPAEVLSSKNIMNIVTNESLSTQLEWMFSYFNTTCSKDCAKEIKSSLFMVGEIGGNDYNYAFMFNKTTEEISALVPEV VRAIKDAVARAIGRGARRVVVPGNFPIGCFPVYLSQFHPNDAAAYDEFHCLKGLNSLASYHNELLKQTVEGLKTNYPDVIIVYGDYYKAFMSIYQNAQSL GFDTKSMQKACCGTGGDHNFSLMRMCGAPDVPVCPKPDQYISWDGVHLTQKAYQHMAEWLINDIFPKLQCSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03980			SGNH hydrolase-type esterase s...		Potri.005G024933 [exp]	0	1
AT1G55570		SKS12	SKU5 similar 12 (.1)		Potri.001G000600 [exp]	3.00	0.7448
					Potri.010G224650 [exp]	3.16	0.7757
AT5G53820			Late embryogenesis abundant pr...		Potri.004G107700 [exp]	7.07	0.6496
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.014G163301 [exp]	8.66	0.7229
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Potri.018G022000 [exp]	9.79	0.6584
AT4G30390			unknown protein		Potri.019G051850 [exp]	12.64	0.6095
AT1G18760			Zinc finger, C3HC4 type (RING ...		Potri.007G118000 [exp]	15.87	0.6218
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Potri.012G072500 [exp]	49.63	0.5306	Pt-MYB.54,MYB198
					Potri.004G127001 [exp]	63.11	0.4935
AT3G03760	AS2	LBD20	LOB domain-containing protein ...		Potri.013G064501 [exp]	151.77	0.4832

Compare expression of checked genes

Potri.005G024933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.