Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPT5.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05530 795 / 0 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT1G09100 780 / 0 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1) AT4G29040 336 / 5e-112 RPT2A regulatory particle AAA-ATPase 2A (.1) AT2G20140 335 / 1e-111 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT5G20000 319 / 7e-106 RPT6A AAA-type ATPase family protein (.1) AT5G19990 318 / 1e-105 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT1G53750 317 / 1e-104 RPT1A regulatory particle triple-A 1A (.1) AT5G58290 305 / 1e-100 RPT3 regulatory particle triple-A ATPase 3 (.1) AT1G53780 306 / 3e-98 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT5G43010 298 / 1e-97 RPT4A regulatory particle triple-A ATPase 4A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G016800 [exp] 815 / 0 AT3G05530 800 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.014G194700 [exp] 335 / 1e-111 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.002G252600 [exp] 332 / 1e-110 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.001G161700 [exp] 320 / 3e-106 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1) Potri.006G216600 [exp] 317 / 8e-105 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1) Potri.008G144100 [exp] 317 / 1e-104 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.018G056600 [exp] 313 / 2e-103 AT1G53750 803 / 0.0 regulatory particle triple-A 1A (.1) Potri.010G098300 [exp] 312 / 5e-103 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.006G031000 [exp] 305 / 2e-100 AT5G58290 771 / 0.0 regulatory particle triple-A ATPase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029887 [exp] 804 / 0 AT3G05530 837 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10031492 [exp] 795 / 0 AT3G05530 820 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10020654 [exp] 751 / 0 AT3G05530 783 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10015524 [exp] 331 / 2e-111 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10011901 [exp] 330 / 6e-108 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10006976 [exp] 324 / 3e-107 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10031815 [exp] 318 / 6e-105 AT1G53750 828 / 0.0 regulatory particle triple-A 1A (.1) Lus10019995 [exp] 330 / 1e-104 AT2G20140 827 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10017762 [exp] 317 / 1e-104 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10031243 [exp] 318 / 2e-103 AT1G53750 841 / 0.0 regulatory particle triple-A 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF07728 [poplar] [flax] AAA_5 AAA domain (dynein-related subfamily)
Representative CDS sequence Show only first row Show all	>Potri.005G025100.1 pacid=42803859 polypeptide=Potri.005G025100.1.p locus=Potri.005G025100 ID=Potri.005G025100.1.v4.1 annot-version=v4.1 ATGGCAACCCCAATGGCGGAGGATTCGAGCTTCGAAGATGACCAGCTTGCCTCCATGACTACTGAAGATATCATAAGAGGTTCTCGTCTTGTCGATAACG AGATTCGCATTCTCAAGGAAGAGGTGCAGAGAACAAATCTGGAGCTGGATTCGTATAAGGAGAAGATAAAAGAGAATCAAGAGAAGATTAAACTCAACAA GCAGCTGCCTTACCTAGTTGGCAACATTGTTGAGATTTTGGAAATGAACCCAGAAGATGAGGCTGAAGAAGACGGAGCAAACATTGACCTTGACTCTCAA AGGAAGGGTAAATGTGTGGTGCTGAAAACATCAACTCGTCAGACTATTTTTCTTCCTGTGGTTGGGCTTGTTGATCCTGACAAGTTGAAGCCTGGTGACT TGGTTGGAGTCAACAAAGATAGCTACTTGATCTTGGATACTCTACCATCGGAGTATGATTCACGAGTGAAGGCCATGGAGGTTGATGAAAAACCAACAGA AGACTACAATGATATTGGAGGCTTGGAGAAGCAGATCCAAGAATTAGTTGAGGCTATTGTACTGCCTATGACTCACAAAGAGCGATTTCAGAAGTTGGGT ATTCGTCCTCCCAAAGGTATCCTCTTATATGGACCTCCTGGAACTGGGAAAACATTGATGGCCCGTGCTTGTGCTGCACAAACAAATGCCACTTTCCTAA AGTTGGCAGGCCCACAACTTGTTCAGATGTTCATTGGAGATGGTGCCAAACTTGTCCGTGATGCCTTCCAGCTTGCAAAAGAGAAATCTCCCTGCATCAT TTTTATAGATGAGATTGATGCTATTGGCACAAAGCGGTTTGACAGTGAGGTTAGTGGAGACAGGGAAGTGCAGAGGACCATGTTAGAATTGCTCAATCAG CTTGATGGCTTTAGCAGCGATGACAGCATTAAGGTGATTGCTGCAACAAATCGCGCTGATATCCTGGACCCAGCCCTCATGCGATCAGGTCGATTGGATC GCAAAATTGAATTTCCACATCCAACTGAAGAAGCAAGAGCTCGAATCTTGCAGATCCACTCAAGGAAGATGAACGTCCATCCTGATGTGAACTTTGAAGA GCTTGCTCGTTCCACGGATGATTTCAATGGGGCACAGCTAAAGGCAGTTTGTGTTGAAGCTGGGATGCTAGCACTTCGCCGGGATGCAACTGAGGTGAAT CATGAGGATTTTAATGAAGGTATCATCCAAGTGCAAGCGAAGAAAAAAGCCAGCCTTAACTATTATGCATAA
AA sequence Show only first row Show all	>Potri.005G025100.1 pacid=42803859 polypeptide=Potri.005G025100.1.p locus=Potri.005G025100 ID=Potri.005G025100.1.v4.1 annot-version=v4.1 MATPMAEDSSFEDDQLASMTTEDIIRGSRLVDNEIRILKEEVQRTNLELDSYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQ RKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLG IRPPKGILLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQ LDGFSSDDSIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVN HEDFNEGIIQVQAKKKASLNYYA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Potri.005G025100 [exp]	0	1	Pt-RPT5.1
AT1G57720			Translation elongation factor ...		Potri.004G226300 [exp]	4.00	0.8426
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Potri.009G133000 [exp]	5.19	0.7834
AT3G62920			unknown protein		Potri.014G133600 [exp]	5.91	0.7737
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Potri.019G108900 [exp]	7.21	0.7294
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Potri.001G052100 [exp]	8.48	0.7556	Pt-KAB1.1
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Potri.006G141300 [exp]	8.83	0.7947
AT4G29830		VIP3	vernalization independence 3, ...		Potri.006G145800 [exp]	10.48	0.7797
AT3G12587			Oligosaccaryltransferase (.1)		Potri.008G053300 [exp]	13.78	0.7595
AT5G50375		CPI1	cyclopropyl isomerase (.1.2)		Potri.015G093500 [exp]	14.45	0.7581
AT1G04630		MEE4	maternal effect embryo arrest ...		Potri.001G054500 [exp]	15.71	0.7547

Compare expression of checked genes

Potri.005G025100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.