Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05520 471 / 2e-169 Subunits of heterodimeric actin filament capping protein Capz superfamily (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G017000 [exp] 597 / 0 AT3G05520 471 / 4e-169 Subunits of heterodimeric actin filament capping protein Capz superfamily (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029890 [exp] 434 / 2e-154 AT3G05520 382 / 7e-134 Subunits of heterodimeric actin filament capping protein Capz superfamily (.1.2) Lus10020651 [exp] 422 / 3e-150 AT3G05520 377 / 1e-132 Subunits of heterodimeric actin filament capping protein Capz superfamily (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01267 [poplar] [flax] F-actin_cap_A F-actin capping protein alpha subunit
Representative CDS sequence Show only first row Show all	>Potri.005G025300.1 pacid=42803632 polypeptide=Potri.005G025300.1.p locus=Potri.005G025300 ID=Potri.005G025300.1.v4.1 annot-version=v4.1 ATGGCAGAAGAGGACTGCGAATTAAACGAGAAGCGAAAGAGAGAGATCGCTAAATGGTTTCTCCTCAACTCTCCCGCCGGTGAAATCCAATACATCGCGA AAGATTTGAGGTCGGTATTGAATGACGAGAAAGCGTATAATGAAGCTGCATTAGAGGCATTTCCTCTTTACAATAAATCTCACTTCATTTGCCTTGAATT ACCTGATCGAAGCGGAGAAGTGTTGGTTACATCATATAATGAGCTTGACGAGAATGAGTTTCTTGATCCTAGGACTGCACAGGTTGCGATAGTTGACCAT GTTAAGCAAGTTTGTACAGACATGAGGCCCACAGCTGATGAGGAACTTTCATCACCATATATTGAAGAATTTCGTTGTGCCCTGGATGCCGAAATACTCA AATATGTTGCAGAAGCTTATCCAAAAGGTATATGTTCTGTCTACTGTGTTAAAGGGAAGGATGTGGAGGGGCCGGGATCTAATTTTGAGCTTGTAGTGGT CATTTCTGCTGTTAGAAATAGCCCACAGAATTTCTGCAATGGAAGTTGGCGATCACTGTGGAACATAGAGTTCAAGGAAGATGTACAAATGCTAGAAGTA AGAGGTGAATTACAGGTGGGTGCCCATTATTTTGAAGAGGGAAATGTTCAGCTGGATGCAAAACATGAATGCAAAGATGCAACAATCTTTCAGGCCCCCG ATGATTGTGCTATTTCCATAGCCAACATTATTCGCCATCATGAGGCACAGTACCTGGAATCTCTTGAGGCGTCCTATTCAAATTTGCCAGATACCACATT CAAGGATCTGCGAAGAAAACTTCCAGTTACTCGCACCTTATTTCCATGGCATAATACTCTACAATTTAGCCTGACAAGAGATATCCAGAAGGAACTTGGA ATTGACAAGTGA
AA sequence Show only first row Show all	>Potri.005G025300.1 pacid=42803632 polypeptide=Potri.005G025300.1.p locus=Potri.005G025300 ID=Potri.005G025300.1.v4.1 annot-version=v4.1 MAEEDCELNEKRKREIAKWFLLNSPAGEIQYIAKDLRSVLNDEKAYNEAALEAFPLYNKSHFICLELPDRSGEVLVTSYNELDENEFLDPRTAQVAIVDH VKQVCTDMRPTADEELSSPYIEEFRCALDAEILKYVAEAYPKGICSVYCVKGKDVEGPGSNFELVVVISAVRNSPQNFCNGSWRSLWNIEFKEDVQMLEV RGELQVGAHYFEEGNVQLDAKHECKDATIFQAPDDCAISIANIIRHHEAQYLESLEASYSNLPDTTFKDLRRKLPVTRTLFPWHNTLQFSLTRDIQKELG IDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05520			Subunits of heterodimeric acti...		Potri.005G025300 [exp]	0	1
AT1G22760		PAB3	poly(A) binding protein 3 (.1)		Potri.005G198500 [exp]	1.41	0.9200
AT5G64570		ATBXL4, XYL4	ARABIDOPSIS THALIANA BETA-D-XY...		Potri.001G206800 [exp]	1.73	0.9184	XYL4.2
AT3G16060			ATP binding microtubule motor ...		Potri.001G182300 [exp]	2.23	0.9115
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Potri.006G110500 [exp]	2.44	0.9072
AT1G09210		AtCRT1b	calreticulin 1b (.1)		Potri.013G009500 [exp]	6.00	0.8869
AT3G16200			unknown protein		Potri.001G186200 [exp]	6.48	0.9034
AT3G52110			unknown protein		Potri.009G061900 [exp]	7.74	0.8580
AT5G26594		ARR24	response regulator 24 (.1)		Potri.001G050800 [exp]	8.60	0.8325
AT2G20840			Secretory carrier membrane pro...		Potri.019G104000 [exp]	10.00	0.9122
AT1G78520			Carbohydrate-binding X8 domain...		Potri.011G099600 [exp]	10.39	0.8353

Compare expression of checked genes

Potri.005G025300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.