Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05510 530 / 0 Phospholipid/glycerol acyltransferase family protein (.1.2) AT1G78690 133 / 2e-35 Phospholipid/glycerol acyltransferase family protein (.1) AT4G30580 47 / 1e-05 LPAT1, ATS2, EMB1995 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G146800 [exp] 132 / 6e-35 AT1G78690 380 / 9e-134 Phospholipid/glycerol acyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020650 [exp] 450 / 4e-155 AT3G05510 438 / 1e-150 Phospholipid/glycerol acyltransferase family protein (.1.2) Lus10029891 [exp] 275 / 3e-86 AT3G05510 255 / 1e-79 Phospholipid/glycerol acyltransferase family protein (.1.2) Lus10004783 [exp] 137 / 6e-37 AT1G78690 353 / 2e-123 Phospholipid/glycerol acyltransferase family protein (.1) Lus10036259 [exp] 47 / 2e-05 AT4G30580 340 / 6e-116 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1) Lus10022158 [exp] 46 / 5e-05 AT4G30580 331 / 5e-111 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF01553 [poplar] [flax] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Potri.005G025400.1 pacid=42804229 polypeptide=Potri.005G025400.1.p locus=Potri.005G025400 ID=Potri.005G025400.1.v4.1 annot-version=v4.1 ATGGCAGTGCAGAGGATAGAGCTAGGAAGAGGAGATCTATGGAAGAGCAAAGCTAAAGCACTACAGCTCCGTCTGCGAGACCGCTTTAGAGTGGTGGTTG ATCGTCATCGCCGCCGTCCTCATATTTTCTCCGCCGCGTCCGATGGTTACTTCTCCTCCACCGTCCAACGGTGGCTCAACCATTTCCGTGATTTTCGGCG AGATTCTCTCCACTCCCACTCCGCTTTCTATCGCAAACGAGTCAGCAAGGACTTTAATGCTGATGAAGAATCGGTTATTATACGAATGGTTCAGTCAGTG GCTGTGCCTCTGCTTGGAAACATGTGTCATGTGTTTATGCACGGACTTAATCGTGTTCAGGTTTATGGTGTGGAGAAATTACATGATGCATTGCTGCATA GACCCAAGAACAAGCCTCTTTTAACGGTGAGCAATCATGTTGCTTCAGTGGATGACCCGTTTATTATTGCTTCACTGCTTCCTCCCAGTGTATTGATGGA TGCTCAGAACTTGAGATGGACGCTTTGTGCTTCTGATCGCTGTTTTAAGAATCCTGTGAGTTCTGCATTTTTCCAATCTGTCAAAGTATTGCCAGTTGCT CGTGGTGAAGGGATTTATCAGAAGGGCATGGACATGGCTATCGCAAAGTTGAACAGTGGTAGTTGGGTTCACATATTCCCGGAAGGTAGTCGTTCTCGGG ATGGTGGAAAAACCATGGGTTCTTCAAAGAGAGGTGTGGGGAGGTTGATCCTTGATGCTGACACTGTCCCTTTGGTCATCCCATTTGTACACACTGGGAT GCAAGAGATCATGCCCATAGGAGCAACTCTCCCAAGGATTGGAAAGAGGGTGACAGTGCTTCTTGGTGATCCAATCCATTTTGACGATATACTTGATGCG GAAGGTGTTGAAAACATATCAAGAGGAAAAATGTATGATGCCGTGTCTTCAAGAATTGGCCAGCGATTGCAACAACTAAAAGTCCAAGTTGAAAAATTAG CATTGGAACAATCAGTCGAGTTTCAACAAGCTGCTGCTGGAATCACAGAGAGGGCAGCTGATATGTTGCAGCAGGTTGACTGGGGTTCATTTGGCGCGGG AAGCCATGTGTCCACCGAAGAAAGAGATTTACCATGTGAACCCCGACCTTCACAGGAGCTCCTTTCTTCGGGTCGGTACTTCAGGATTGGATTCTCTTAT GACAGTATAATCATTTCAAGGATGCGTGGCTACATGGACTCAACTGAGCTACTGGGTTTTGCAGCCAGAGGCCTGTTCATGAACTTTAGGGCAAGGGAAC ATACTGCTAGTATTAGAGATGTAGGCCCAGTGAGGGCATGGAAACAGTTTTTGGAAGCTAACTTACTGGGGCAATGGAACGCCTGCTAG
AA sequence Show only first row Show all	>Potri.005G025400.1 pacid=42804229 polypeptide=Potri.005G025400.1.p locus=Potri.005G025400 ID=Potri.005G025400.1.v4.1 annot-version=v4.1 MAVQRIELGRGDLWKSKAKALQLRLRDRFRVVVDRHRRRPHIFSAASDGYFSSTVQRWLNHFRDFRRDSLHSHSAFYRKRVSKDFNADEESVIIRMVQSV AVPLLGNMCHVFMHGLNRVQVYGVEKLHDALLHRPKNKPLLTVSNHVASVDDPFIIASLLPPSVLMDAQNLRWTLCASDRCFKNPVSSAFFQSVKVLPVA RGEGIYQKGMDMAIAKLNSGSWVHIFPEGSRSRDGGKTMGSSKRGVGRLILDADTVPLVIPFVHTGMQEIMPIGATLPRIGKRVTVLLGDPIHFDDILDA EGVENISRGKMYDAVSSRIGQRLQQLKVQVEKLALEQSVEFQQAAAGITERAADMLQQVDWGSFGAGSHVSTEERDLPCEPRPSQELLSSGRYFRIGFSY DSIIISRMRGYMDSTELLGFAARGLFMNFRAREHTASIRDVGPVRAWKQFLEANLLGQWNAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05510			Phospholipid/glycerol acyltran...		Potri.005G025400 [exp]	0	1
AT4G14305			Peroxisomal membrane 22 kDa (M...		Potri.004G009201 [exp]	40.69	0.7233
AT1G12390			Cornichon family protein (.1)		Potri.001G116100 [exp]	42.49	0.7265
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Potri.004G080200 [exp]	46.86	0.7369
AT2G35035		URED	urease accessory protein D (.1...		Potri.001G159600 [exp]	51.48	0.7285
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Potri.007G000300 [exp]	52.42	0.7280
AT2G30000			PHF5-like protein (.1)		Potri.008G028300 [exp]	54.79	0.7184
AT5G18610			Protein kinase superfamily pro...		Potri.008G046500 [exp]	60.56	0.7152	Pt-PNPK2.2
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Potri.001G099900 [exp]	63.87	0.6930
AT2G26770		SCAB1	stomatal closure-related actin...		Potri.009G066800 [exp]	69.91	0.6813
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Potri.008G140500 [exp]	94.07	0.7135

Compare expression of checked genes

Potri.005G025400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.