Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SRPP.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05500 278 / 5e-95 Rubber elongation factor protein (REF) (.1) AT2G47780 166 / 5e-51 Rubber elongation factor protein (REF) (.1) AT1G67360 115 / 2e-31 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G017300 [exp] 380 / 2e-135 AT3G05500 258 / 6e-87 Rubber elongation factor protein (REF) (.1) Potri.002G206000 [exp] 230 / 5e-76 AT3G05500 238 / 4e-79 Rubber elongation factor protein (REF) (.1) Potri.001G055300 [exp] 129 / 1e-36 AT1G67360 249 / 1e-83 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2) Potri.003G173100 [exp] 123 / 2e-34 AT1G67360 239 / 7e-80 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020648 [exp] 306 / 4e-106 AT3G05500 317 / 2e-110 Rubber elongation factor protein (REF) (.1) Lus10029892 [exp] 306 / 5e-106 AT3G05500 317 / 3e-110 Rubber elongation factor protein (REF) (.1) Lus10015171 [exp] 281 / 2e-96 AT3G05500 282 / 1e-96 Rubber elongation factor protein (REF) (.1) Lus10031493 [exp] 283 / 3e-95 AT3G05500 285 / 4e-96 Rubber elongation factor protein (REF) (.1) Lus10015786 [exp] 122 / 1e-31 AT1G67370 600 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10037019 [exp] 115 / 5e-29 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05755 [poplar] [flax] REF Rubber elongation factor protein (REF)
Representative CDS sequence Show only first row Show all	>Potri.005G025700.1 pacid=42805192 polypeptide=Potri.005G025700.1.p locus=Potri.005G025700 ID=Potri.005G025700.1.v4.1 annot-version=v4.1 ATGGCTGAAAATGATGTCAACATGCAACAGCAACTGGACAAAGAGGAGGAGGAGAGGAGGCTGAAGTACTTGCAGTTTGTGCAAGTGGCTGCAGTACATG CTGTGTTGACGTTTACAAACCTCTATATTTATGCTAAAGACAAGGCTGGACCGTTGAAGCCCGGTGTGGAGACTGTTGAGGGGACCGTTAAGAGTGTTGT TGGACCTGTTTATGATAAGTTTCGTGAAGTTCCTATTGAGGTTCTCAAGTTTGTTGATCGCAAGGTGGATGAATCTGTCACTAATATGGACAACCATGTG CCCCCACTCGTCAAACAGGTGTCATCCCGAGCACTCTTGGCAGCTCAAAATGCTCCAGTGGCAGCTCGAGCAGTGGCTTCTGAAGTTCAGCGTGCTGGTG TGAAAGAAACCGCCTCCGAATTGGCAAAATCTGTTTACTCCAAGTACGAGCCTACAGCCAAGGAGCTCTACTCCAAGTACGAACCGAAGGCAGAACAAGC TGCTGTCTCTGCCTGGCGCAAGCTCAATCAGCTCCCACTCTTCCCTCAAGTGGCTCAGGTGGTTGTGCCAACTGCTGCCTTTTGTTCTGAGAAGTACAAT CAAACCATACTCAGCACTGCAGAGAAGGGATACAAGGTATCCTTGTATTTGCCCCTGGTGCCTACCGAGAAGATTGCTAAGGTCTTTAGCGTTGAAGTGC CTGAATCAGCCCCATTGGTTTCCAGCTAG
AA sequence Show only first row Show all	>Potri.005G025700.1 pacid=42805192 polypeptide=Potri.005G025700.1.p locus=Potri.005G025700 ID=Potri.005G025700.1.v4.1 annot-version=v4.1 MAENDVNMQQQLDKEEEERRLKYLQFVQVAAVHAVLTFTNLYIYAKDKAGPLKPGVETVEGTVKSVVGPVYDKFREVPIEVLKFVDRKVDESVTNMDNHV PPLVKQVSSRALLAAQNAPVAARAVASEVQRAGVKETASELAKSVYSKYEPTAKELYSKYEPKAEQAAVSAWRKLNQLPLFPQVAQVVVPTAAFCSEKYN QTILSTAEKGYKVSLYLPLVPTEKIAKVFSVEVPESAPLVSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05500			Rubber elongation factor prote...		Potri.005G025700 [exp]	0	1	Pt-SRPP.3
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Potri.015G038100 [exp]	8.00	0.8359
AT1G80040			unknown protein		Potri.005G121100 [exp]	15.29	0.7815
AT4G27670		HSP21	heat shock protein 21 (.1)		Potri.010G053400 [exp]	17.83	0.8299
AT5G20620		UBQ4	ubiquitin 4 (.1)		Potri.006G129600 [exp]	20.09	0.8348	SUBI.10
AT2G20560			DNAJ heat shock family protein...		Potri.007G136700 [exp]	20.24	0.8207
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.010G206600 [exp]	21.35	0.8216
AT3G51980			ARM repeat superfamily protein...		Potri.001G072200 [exp]	22.71	0.7479
AT3G12680	C3HZnF	HUA1	ENHANCER OF AG-4 1, floral hom...		Potri.010G176300 [exp]	26.66	0.6497	HUA1.2
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.015G109200 [exp]	33.16	0.7384	CNX1.1
AT1G07400			HSP20-like chaperones superfam...		Potri.009G039200 [exp]	34.72	0.8157

Compare expression of checked genes

Potri.005G025700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.