Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27690 100 / 5e-24 Heavy metal transport/detoxification superfamily protein (.1) AT3G06130 74 / 1e-14 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G56210 74 / 2e-14 Heavy metal transport/detoxification superfamily protein (.1) AT5G19090 73 / 3e-14 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT3G05220 67 / 3e-12 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G23000 65 / 1e-11 Heavy metal transport/detoxification superfamily protein (.1) AT5G37860 59 / 7e-10 Heavy metal transport/detoxification superfamily protein (.1) AT1G66240 52 / 1e-08 ATX1, ATATX1 homolog of anti-oxidant 1 (.1.2.3) AT4G08570 52 / 5e-08 Heavy metal transport/detoxification superfamily protein (.1) AT3G56240 50 / 1e-07 ATX1, CCH copper chaperone (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G017700 [exp] 129 / 2e-34 AT5G27690 115 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1) Potri.014G132000 [exp] 94 / 4e-22 AT5G27690 114 / 4e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G024700 [exp] 91 / 4e-21 AT5G27690 114 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.002G206900 [exp] 91 / 5e-21 AT5G27690 111 / 3e-28 Heavy metal transport/detoxification superfamily protein (.1) Potri.008G202800 [exp] 77 / 2e-15 AT3G06130 150 / 6e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.008G128400 [exp] 76 / 2e-15 AT1G23000 137 / 1e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G114300 [exp] 74 / 9e-15 AT1G23000 128 / 2e-33 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G091700 [exp] 64 / 2e-11 AT1G23000 99 / 1e-23 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G175400 [exp] 59 / 2e-10 AT4G38580 254 / 2e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031495 [exp] 109 / 3e-27 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10015174 [exp] 104 / 2e-25 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10032445 [exp] 77 / 1e-15 AT1G23000 129 / 2e-34 Heavy metal transport/detoxification superfamily protein (.1) Lus10041228 [exp] 74 / 2e-14 AT3G06130 149 / 3e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10029942 [exp] 66 / 7e-12 AT5G19090 125 / 1e-31 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10004465 [exp] 64 / 3e-11 AT5G19090 122 / 2e-30 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10028426 [exp] 60 / 8e-11 AT4G38580 228 / 4e-78 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Lus10041879 [exp] 60 / 8e-11 AT4G38580 228 / 4e-78 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Lus10031514 [exp] 62 / 1e-10 AT5G19090 118 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10039419 [exp] 59 / 1e-10 AT4G08570 215 / 5e-73 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [poplar] [flax] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Potri.005G026100.1 pacid=42804637 polypeptide=Potri.005G026100.1.p locus=Potri.005G026100 ID=Potri.005G026100.1.v4.1 annot-version=v4.1 ATGGCAACAGGGACAGAAGCTAAAGAAGGAGGATCAGGAGAAAACAAAGAGCCACCTCTCAAGTACAAGACATTGGTCTTGAAGGTCTCAGTTCACTGTG AAGAGTGCAAGAGGAAGGTCAAAAAGATCTTGAATAATATAGATGGCGTGTACACCACAGATGTTGATTTAAGGCAACAAAAGGCCACGGTAATAGGGAA TGTTGATGCAGATACTTTAATCAAGAAACTTATAAAAAAGACAGGGAAGCATGCAGAGTTGTGGCCTGAAAAAGCTGATAACAATCAGAAAGATAAAAAG AAAGGAAAAGGAAAGAAGAAAGAGAAAGAGAAAGGGAAAGAGAAAGAAAGTGACCAAGAAAGCAGCGATGAAGAAGGCAGTGACGGTGGAAATGAGAAAG AAGTTAAAGGCAAGACTGAAGGTTGTCAAACTGGTACCTCACTGGGAGGTGGCCAGTCACCGGTGACTGACAAGAAAGTTGATGGTCAGAGTGAGGTTGG AGCCGGGGGTAGTGCTGGTGGTGGTAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGGCGCATACAGCAGGGAACAACAACCCTGTTGATGAGGCTGAA CATTCTGTTCGTGCGCCAGCAGGCACTGGATCGCCAACTCTTGGGAATGTTCATGTCCAAATCGCACACCCTACCAATCACAGCCCTCAACGTCAGCATG TGTATGACTACCCAGCAACAACTTACTATGCACCCACGGTGTACGCTGTGAGCAGCAATGTCGCATGCCCTAGCACTTTTTATGGTGCCTCATACTATTC CCCACCGTATTCCTACGCGTGTATGCATCCGCCGTCCGATTTGGATACATATCCGCCACAGCCGTCCGGTTCATTCGAGATTTTTAGCGACGAAAACCCT AATGCATGCTCAATTATGTGA
AA sequence Show only first row Show all	>Potri.005G026100.1 pacid=42804637 polypeptide=Potri.005G026100.1.p locus=Potri.005G026100 ID=Potri.005G026100.1.v4.1 annot-version=v4.1 MATGTEAKEGGSGENKEPPLKYKTLVLKVSVHCEECKRKVKKILNNIDGVYTTDVDLRQQKATVIGNVDADTLIKKLIKKTGKHAELWPEKADNNQKDKK KGKGKKKEKEKGKEKESDQESSDEEGSDGGNEKEVKGKTEGCQTGTSLGGGQSPVTDKKVDGQSEVGAGGSAGGGKKKKKKKKKKKAHTAGNNNPVDEAE HSVRAPAGTGSPTLGNVHVQIAHPTNHSPQRQHVYDYPATTYYAPTVYAVSSNVACPSTFYGASYYSPPYSYACMHPPSDLDTYPPQPSGSFEIFSDENP NACSIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27690			Heavy metal transport/detoxifi...		Potri.005G026100 [exp]	0	1
AT3G24770		CLE41	CLAVATA3/ESR-RELATED 41 (.1)		Potri.002G241300 [exp]	1.73	0.9080
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Potri.010G102700 [exp]	5.09	0.8689
AT5G57130			Clp amino terminal domain-cont...		Potri.018G140900 [exp]	6.24	0.8854
AT1G13420		SST1, ATST4B	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.017G100500 [exp]	6.32	0.9007
AT5G51970			GroES-like zinc-binding alcoho...		Potri.012G134900 [exp]	7.74	0.8604	NAD-SDH.1
AT4G34560			unknown protein		Potri.009G119000 [exp]	8.94	0.8633
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Potri.010G174100 [exp]	12.00	0.8727
					Potri.005G078500 [exp]	13.11	0.8847
AT5G55530			Calcium-dependent lipid-bindin...		Potri.001G361100 [exp]	17.46	0.8768
AT1G53470		MSL4	mechanosensitive channel of sm...		Potri.005G246600 [exp]	18.76	0.8378

Compare expression of checked genes

Potri.005G026100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.