Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05470 652 / 0 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G67470 378 / 2e-116 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G25500 380 / 7e-116 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT5G54650 375 / 5e-115 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT2G43800 338 / 9e-102 Actin-binding FH2 (formin homology 2) family protein (.1) AT4G15200 319 / 9e-96 AFH3 formin 3 (.1.2) AT1G70140 294 / 2e-86 ATFH8 formin 8 (.1) AT1G59910 271 / 7e-77 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 228 / 2e-63 ATFH4, FH4 formin homologue 4 (.1) AT5G48360 221 / 2e-60 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G017900 [exp] 1259 / 0 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.007G054900 [exp] 399 / 5e-124 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.017G009900 [exp] 381 / 9e-117 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.014G174700 [exp] 383 / 2e-116 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 380 / 2e-115 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.007G140200 [exp] 377 / 2e-115 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.011G131700 [exp] 365 / 1e-110 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 362 / 6e-110 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G119900 [exp] 358 / 6e-109 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031496 [exp] 631 / 0 AT3G05470 608 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10015175 [exp] 615 / 0 AT3G05470 635 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10004505 [exp] 607 / 0 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10029897 [exp] 578 / 0 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10011524 [exp] 389 / 9e-120 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10019298 [exp] 387 / 3e-119 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10002149 [exp] 375 / 2e-113 AT3G25500 717 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Lus10008739 [exp] 374 / 4e-113 AT5G67470 711 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10025195 [exp] 366 / 1e-111 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011168 [exp] 337 / 8e-101 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [poplar] [flax] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Potri.005G026300.1 pacid=42805500 polypeptide=Potri.005G026300.1.p locus=Potri.005G026300 ID=Potri.005G026300.1.v4.1 annot-version=v4.1 ATGGGTTGTGCTCCTCAGATTCTCCACATGATCTTCATCGCCACTATTTTTATGCTTGTATTATCACAAAGTGCCCACCTTTTGATTTCTGATGCTTCAG TGGACGCACAAGGGTGCTTCAAAGCTCCTGGCCTACCAAGGGTGGATTTCGTGGAGGAAAGCACTGAAGATGTTAATGATGAGAAGAGAATTGAGAAAGT TTCAGGAGAAGATGAGAATGAAGGGAAAGAAGCATTGATCGTTCAAAAGTTTAGAGCTTTACTTGGACTAAAGAGTTCCAAAAGAAGAAGCTCGTCAGTT GAGTTTGTGTCACCAGCACCTTCCCCACCACCCACCATTGAAGCTGAGCCTCCAGCTTTTGCTCCTGCTCCTGCTCCTGCTCCAAAGCTACCAGTTCATG TACATTCCTATTCTCCACCGCATCACAACCAACAAGCCTCACCACCACACAAGATTTGGAGGGAGCACGAAGATAAGAGTAGGCTTGAGACAATTCTTGT AGCAGTTCTAGGGTCTATAGGAGCTGCCTTCTTGTTTTGTGTTCTTGGGCTCATTTGGTTCTCTGGCAAATTCATGGAGCAAAGGAAAAAATCTGCAAGA AAAACTTCGAAGCAAAGGAAAAGAGGAAGAAGCAGAGGTGAATCAAAGTATGTGAGTTCTCAAAGGTCACCAAGCAAGGTGATCTTAAATCCTGCCCTTG ATCTCTTGTATCTTAATTCATTAGAAAAGGATTTGGAGCAACAAACTACTTATCTTAATCGAATTCCTGAAACTGTAAACACGTTATCAAATCATAACAC ACCGAAGTCTACAATACATGAGAGGCAGGAATCAAAGCAAGAATTGGTAATGAAATCAGATTCTGATAATGCCAGTAGTTCTTCCAGAAGGGAAATCAAG CATGTTCATGATAATTTGGAATCGGTAATGTATGAATCTGATGGTGGTAACTCTTCGTCTGGGGATAAAATTATTCCCGCTGAATGTCATTCATCAGATG ATGAATCTTTTCACTCTTTTGTTGATTCTCGATCATCTAATGCTCGGCTTTCGAATGCTTCGGCTGGTAGTCTCAACGATATTTCCGAAATTTCCCCCTC AAACGCACTAAAGATAATGCCATCTCCTCCACCAGCTCCAAAAAATCCAAACATTCAAGAAGAAACACTAGTTCATGATAAGAATTTTACAACTCAATCC CCGTCACTGCCTCTGCCACCGCCCCCTCCCCCTCCATCACCTCCACTCACTTTGGCACAAAGAATGTGCATACCTCCTTCAAGCACATCTTTGCAGTCTA CCAGAATGGCATCTGAAGCTTCAAGTTCTTCTACGCTACCAAATTTATCACCTCCTAGGAAGCCAGGTGCTTCTTCAGGATCAAACCGAACACCTCGTAA TGACTTGCCGACTTCACCTCAAAAGTCTCCCAAACCTACAGGTGCGCTATTAAGTATTCCTCCTCCGCCATGCCCACCTCCATTTCGGAAAGGAAATAAT AGCTCTGCCAATGGCCCACCTCCTCCACCATGCCCACCTCCATTCCTGAAAGGGAACAATGGCTCTGCCACTGGGCCACCTCCTTCGCCATCTGATCAGC TTTCTCAATATACACCACTGGGAAAAGATGGAGCACCACTGACAAAATTGAAGCCACTTCATTGGGACAAAGTTAGAGCTGCACCAGACAAAAGCATGGT GTGGGACAAGATAAGATCAAGCTCATTTGAATTAGATGAAGAGATGATTGAATCACTATTTGGGTACAATTTCCAAAGCACAGAGAAGAATGATGAAGCG AAGAGCAAAACTCCTTCACCAAGCAAGCATGTGCTTGAGCCAAAGAGACTGCAGAACATCACCATTCTCTCAAAAGCCATAAATGCAACTGCTGAGCAAG TGTGTGGTGCACTAATGAGAGGGGATGGCTTGTGTTTACAACAACTCGAGGCACTGGCAAAGATGGTACCTACTGAGGAAGAAGAGGCTAAGCTATTCGG TTATAAAGGAAACATCAATGAGTTGGGGTCTGCAGAGAAGTTTGTTCGAGTAGTTCTTAGCATACCATTTGCCTTTCAACGAGTTGAAGCCATGCTTTAT AGAGAAACTTTTGAAGATGAGGTGGTTCATCTGAGAAACTCTTTTTCGATGCTAGAGGAAGCCTGCAAAGAACTCAGGTCAAGCAGACTCTTCTTAAAGT TGCTTGAAGCAGTGCTCAAAACAGGCAACCGGATGAATGTGGGGACAATCAGAGGAGGTGCGAAAGCATTCAAACTCGATGCACTCCTTAAACTTTCTGA TGTGAAAGGAACAGATGGTAAAACTACCTTGCTCCACTTCGTTGTCCAAGAAATAATCCGGTCGGAAGGGATTCGAGTATCAGATAGCATTATGGGGAGG ATCAATCAGAAAAACAAAACTAAAACCGTCGAAGAAAGGGAAGAAGATTACAGAAGAATGGGACTCGACCTGGTTTCAGGTCTAAGCACGGAACTCTACA ATGTCAGGAAAACAGCTACAATAGACCTTGATGTTCTTGCAAGTTCAGTCTCAAACCTATCGGATGGAATGGAAAAATTAAAACAGCTAGTAACCAAGGA CTCATTGACCGATGAAAAGAGCAGAAACTTTGTTCACACGACGAAATCCTTCCTAAATTATGCAGCAAGGAATCTAAAGGAGTTGCACGAAGACGAAGGT AGAGTCATGTTGCATGTTAGAGAAATTACAGAATACTTTCATGGATATGTAAGCAGGGAAGAATCCAATCCACTTCGTATTTTCGTGATTGTAAGAGACT TTCTGGGAATGTTAGATCATGTCTGTAAAGAACTTAAGAGCCTCAAAGTCCCTAGCAGTCCAAACCCTCTTGCTCCATTTAGGTAG
AA sequence Show only first row Show all	>Potri.005G026300.1 pacid=42805500 polypeptide=Potri.005G026300.1.p locus=Potri.005G026300 ID=Potri.005G026300.1.v4.1 annot-version=v4.1 MGCAPQILHMIFIATIFMLVLSQSAHLLISDASVDAQGCFKAPGLPRVDFVEESTEDVNDEKRIEKVSGEDENEGKEALIVQKFRALLGLKSSKRRSSSV EFVSPAPSPPPTIEAEPPAFAPAPAPAPKLPVHVHSYSPPHHNQQASPPHKIWREHEDKSRLETILVAVLGSIGAAFLFCVLGLIWFSGKFMEQRKKSAR KTSKQRKRGRSRGESKYVSSQRSPSKVILNPALDLLYLNSLEKDLEQQTTYLNRIPETVNTLSNHNTPKSTIHERQESKQELVMKSDSDNASSSSRREIK HVHDNLESVMYESDGGNSSSGDKIIPAECHSSDDESFHSFVDSRSSNARLSNASAGSLNDISEISPSNALKIMPSPPPAPKNPNIQEETLVHDKNFTTQS PSLPLPPPPPPPSPPLTLAQRMCIPPSSTSLQSTRMASEASSSSTLPNLSPPRKPGASSGSNRTPRNDLPTSPQKSPKPTGALLSIPPPPCPPPFRKGNN SSANGPPPPPCPPPFLKGNNGSATGPPPSPSDQLSQYTPLGKDGAPLTKLKPLHWDKVRAAPDKSMVWDKIRSSSFELDEEMIESLFGYNFQSTEKNDEA KSKTPSPSKHVLEPKRLQNITILSKAINATAEQVCGALMRGDGLCLQQLEALAKMVPTEEEEAKLFGYKGNINELGSAEKFVRVVLSIPFAFQRVEAMLY RETFEDEVVHLRNSFSMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGAKAFKLDALLKLSDVKGTDGKTTLLHFVVQEIIRSEGIRVSDSIMGR INQKNKTKTVEEREEDYRRMGLDLVSGLSTELYNVRKTATIDLDVLASSVSNLSDGMEKLKQLVTKDSLTDEKSRNFVHTTKSFLNYAARNLKELHEDEG RVMLHVREITEYFHGYVSREESNPLRIFVIVRDFLGMLDHVCKELKSLKVPSSPNPLAPFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05470			Actin-binding FH2 (formin homo...		Potri.005G026300 [exp]	0	1
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Potri.003G172400 [exp]	2.00	0.9960
AT2G10940			Bifunctional inhibitor/lipid-t...		Potri.006G065500 [exp]	2.23	0.9963
AT4G08910			unknown protein		Potri.002G231400 [exp]	2.82	0.9963
					Potri.006G028000 [exp]	3.00	0.9962
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Potri.015G147300 [exp]	4.69	0.9918
AT1G12570			Glucose-methanol-choline (GMC)...		Potri.001G111500 [exp]	5.00	0.9957
AT4G38840			SAUR-like auxin-responsive pro...		Potri.009G126900 [exp]	6.00	0.9951
AT1G75280			NmrA-like negative transcripti...		Potri.013G103850 [exp]	6.24	0.9910
AT3G11210			SGNH hydrolase-type esterase s...		Potri.016G115800 [exp]	7.00	0.9939	CPRD49.1
AT2G18969			unknown protein		Potri.018G090200 [exp]	8.94	0.9937

Compare expression of checked genes

Potri.005G026300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.