Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27680 876 / 0 RECQSIM RECQ helicase SIM (.1) AT1G31360 164 / 7e-42 MED34, ATRECQ2, RECQL2 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) AT4G35740 163 / 2e-41 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) AT3G05740 154 / 6e-39 RECQI1 RECQ helicase l1 (.1) AT1G60930 151 / 4e-37 RECQL4B ,ATRECQ4B RECQ helicase L4B (.1) AT1G10930 151 / 4e-37 ATSGS1, RECQL4A ,ATRECQ4A DNA helicase (RECQl4A) (.1) AT1G27880 107 / 2e-23 DEAD/DEAH box RNA helicase family protein (.1) AT5G26742 54 / 6e-07 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT3G01540 52 / 1e-06 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT4G15850 50 / 4e-06 ATRH1 RNA helicase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G161200 [exp] 181 / 7e-47 AT1G31360 310 / 2e-93 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.005G019800 [exp] 164 / 3e-42 AT3G05740 828 / 0.0 RECQ helicase l1 (.1) Potri.003G104300 [exp] 163 / 1e-41 AT1G31360 986 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.005G107400 [exp] 162 / 5e-41 AT4G35740 850 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Potri.003G015800 [exp] 143 / 1e-34 AT1G10930 1329 / 0.0 DNA helicase (RECQl4A) (.1) Potri.010G056500 [exp] 104 / 1e-22 AT1G27880 935 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.004G158000 [exp] 52 / 1e-06 AT4G15850 740 / 0.0 RNA helicase 1 (.1) Potri.005G000500 [exp] 50 / 6e-06 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.014G140100 [exp] 49 / 1e-05 AT3G02065 681 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004503 [exp] 1041 / 0 AT5G27680 912 / 0.0 RECQ helicase SIM (.1) Lus10042451 [exp] 167 / 5e-43 AT3G05740 814 / 0.0 RECQ helicase l1 (.1) Lus10026219 [exp] 165 / 2e-42 AT3G05740 816 / 0.0 RECQ helicase l1 (.1) Lus10034434 [exp] 157 / 3e-39 AT1G31360 280 / 2e-82 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10034749 [exp] 154 / 2e-38 AT1G31360 853 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10029898 [exp] 139 / 1e-37 AT5G27680 107 / 6e-27 RECQ helicase SIM (.1) Lus10015467 [exp] 144 / 1e-34 AT1G10930 1288 / 0.0 DNA helicase (RECQl4A) (.1) Lus10041840 [exp] 142 / 2e-34 AT4G35740 879 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10033289 [exp] 141 / 3e-34 AT1G31360 949 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10028387 [exp] 138 / 2e-33 AT4G35740 778 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF16124 [poplar] [flax] RecQ_Zn_bind RecQ zinc-binding
Representative CDS sequence Show only first row Show all	>Potri.005G026400.2 pacid=42804217 polypeptide=Potri.005G026400.2.p locus=Potri.005G026400 ID=Potri.005G026400.2.v4.1 annot-version=v4.1 ATGGAAAAATCTGTGGCTTGTGATGGAACCGTTGAAAAGCTTATAGAAATGGGGTTTGAGAGTTGTGCGGCGGAACAAGCTGTTAAAGAAGTCGGTCCGT CGTTGGATAAAGCTGTGGATTATTTATTGAACGGTTCTTCGAGCAGAAATTGTGAAGGTAGTGGTGCTATGACCAGTAGTTCTGAATGCTTTACAAGCAG CAAAAGTGGAAAGAGAATGCTGTCTGGCTCTGCCTATTCGGGTCGAAAGCGACAGTCTAGTATATTGGAGCATTTCCGGTTGCCACGCAGCGTGAAACGA GGCATGCTTAGTAGTGATGTGTCTGATGTTTTGGTTTCTGGGTCAAAGGTTTTGCCGCTTAGTGTGAATGGATGTGAGGAATCGTGTGTTAGCGTGGATT GTGGTAAGGTCGAGAATGCGGTGGATGGTTTGCCAGTTTGGTGTAAAGAAGAGGTGGGTTTTGGATTGGATTGGGAGGAGAGAGCGAATAGGGTATTGCG AGAGCGTTTTGGTTATAGTTCATTAAAGGGTTTCCAAAAGGAAGCCTTGGCTGCTTGGGCAGCTCATCAAGATTGCCTTGTTCTTGCCGCTACAGGATCT GGAAAATCTTTGTGTTTCCAGATTCCAGCATTACTAACAGGAAAGGTTGTGGTTGTGATTTCACCGTTGATTAGCTTGATGCATGATCAGTGCTTAAAGC TATCAAAACATGGGGTCTCTGCGTGCTTTCTTGGATCTGGGCAGCCTGATAGCAGTGTGGAAAAGAAAGCAATGAGAGGCATGTATGACATAATATATGT CTGCCCAGAGACAATTTCAAGACTGATAAAACCGCTCCAGGGACTTGCAGAAAGTCGTGGCATAACTTTGTTTGCTATTGATGAAGTCCATTGTGTTTCT AAGTGGGGACATAATTTTCGGCCTAGCTACAGGCAATTGTCTGTTCTCCGGGAGAACTTCAGTGCTTGCAATCTAAAATTCTTAAAATTCAACATCCCAC TGATGGCGTTGACCGCAACTGCCACAATTCCGGTTCGAGGAGATGTGCTTAAAGTGCTGAGCATGTCAAAGGAAACAAAGGTTGTGCTAACTTCATTTTT TCGGCCAAATCTACGGTTCTCGGTAAAACATTGTAGAACCTCTTCTCCATCTTCTTATGGGAAGAATCTCAGCCATTTGATAGGCATATATGCTGGAAAG AAAAGGTCTAATGAAAAGAAGTGGAGTAGTATCGCGGAAGAATTAGATGATTGCTCTGATAGCTCTGCTGATAATAGCATATCTGATGGAGATGTATCTT CTCCAAATGACATGAACAGAATTGAAGATGATTGCTGTGATGTAGATGGTGATGAATTAAATTTAACAAAGGAAAATGGATTGACTGCTTCAAGGGAAAA AGAAATGTCAATTGAATATTTGGAAAATGATGTTGATGTCTTTCACATTGTGGATGATTGGGATGTTGCATGTGGTGAATTCATTGGACAATCTCCTTGC AAGGACCAGTATATTTGCAAGTCATCTGAAACAGTTGATCCCTCTAGTAAGATAGAAGACAGGTCGAAACTTTTGCAAGCGCCTTTAGAAGAAGGAGCAA CCATCATATATGTTCCTACAAGAAAACAAACATTGAGCATCACAGAGTATCTTTGTGGTTTCGGCGTGAAAGCTGCTGCTTATAATGCATCGTTGCCAAA ATCACACCTAAGGCAGGTCCACAAGGAATTCCATGAAAACTTGATACAGGTGGTTGTCGCAACAGTTGCTTTTGGAATGGGAATTGACAAATCAAATATC AGAAGAATTATTCACTATGGCTGGCCACAGAGTTTGGAAGCATATTATCAAGAAGCAGGCCGTGCTGGAAGGGATGGGAAACTAGCAGAATGCGTTCTGT ATGCAAACCTGTCAAGAACACCATCACTTTTACCAAGTAAAAGAAGTGAAGCTCAGACAAAACATGCATTCAAGATGTTGTCTGATTGTTTCAGGTATGG AATGAACACCTCATGTTGTCGAGCTAAAACACTTGTAGAGTATTTTGGGGAGGATTTCAGTTATGAGAAGTGCCTCTTGTGCGATGTGTGTGTCAATGGG CCTCCAGAAATGCAGGATTTGAAAGAGGAGGCTGATATTTTAATGAAGGTCATTGCAGCGTATCATCTAAGTGAACAGAACCATTCTTTTGATAGCTCAT ATGATGGTAAATGTAATGACACTAAATCACAGAGAGCGGTGCAGAAGCCAAACCTCAGAATGTTCGTCACTAAAATAAAGGAGCAGTATCAAAAATTTTG GACAACAGATCAGCTATGGTGGCAAGGTCTAGCTCGGATTATGGAAGGCAAAGGATACATCAGAGAGGGTGATGAAAAGAGCCATGTCCAGATAAAATGC CCGGAGCCAACAAAATTAGGACTTGACTATCTGGAATATGATAGAGAGCAACCGCTCTCTGTTTACCCTGAAGCTGATATGCAACTCTCAGTGAACAAAC ACAAATCATATTCTTCTTTTGCGGAATGGGGCAAAGGTTGGGCTGATCCAGAGATCCGTCGTCAGCGCTTAGAAAGAAAGCAATCAAATAGAAAGCCACG AAAGCCGAGACGGACGAGAAAATCTGGTAAAATGAAACTGGATTTCAAAACCGCCAGGGGTAGAATAGCAGCAAAACTCTTTTCCAAACAGAAGTGA
AA sequence Show only first row Show all	>Potri.005G026400.2 pacid=42804217 polypeptide=Potri.005G026400.2.p locus=Potri.005G026400 ID=Potri.005G026400.2.v4.1 annot-version=v4.1 MEKSVACDGTVEKLIEMGFESCAAEQAVKEVGPSLDKAVDYLLNGSSSRNCEGSGAMTSSSECFTSSKSGKRMLSGSAYSGRKRQSSILEHFRLPRSVKR GMLSSDVSDVLVSGSKVLPLSVNGCEESCVSVDCGKVENAVDGLPVWCKEEVGFGLDWEERANRVLRERFGYSSLKGFQKEALAAWAAHQDCLVLAATGS GKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLSKHGVSACFLGSGQPDSSVEKKAMRGMYDIIYVCPETISRLIKPLQGLAESRGITLFAIDEVHCVS KWGHNFRPSYRQLSVLRENFSACNLKFLKFNIPLMALTATATIPVRGDVLKVLSMSKETKVVLTSFFRPNLRFSVKHCRTSSPSSYGKNLSHLIGIYAGK KRSNEKKWSSIAEELDDCSDSSADNSISDGDVSSPNDMNRIEDDCCDVDGDELNLTKENGLTASREKEMSIEYLENDVDVFHIVDDWDVACGEFIGQSPC KDQYICKSSETVDPSSKIEDRSKLLQAPLEEGATIIYVPTRKQTLSITEYLCGFGVKAAAYNASLPKSHLRQVHKEFHENLIQVVVATVAFGMGIDKSNI RRIIHYGWPQSLEAYYQEAGRAGRDGKLAECVLYANLSRTPSLLPSKRSEAQTKHAFKMLSDCFRYGMNTSCCRAKTLVEYFGEDFSYEKCLLCDVCVNG PPEMQDLKEEADILMKVIAAYHLSEQNHSFDSSYDGKCNDTKSQRAVQKPNLRMFVTKIKEQYQKFWTTDQLWWQGLARIMEGKGYIREGDEKSHVQIKC PEPTKLGLDYLEYDREQPLSVYPEADMQLSVNKHKSYSSFAEWGKGWADPEIRRQRLERKQSNRKPRKPRRTRKSGKMKLDFKTARGRIAAKLFSKQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Potri.005G026400 [exp]	0	1
AT1G58060			RNA helicase family protein (....		Potri.004G222900 [exp]	10.19	0.7449
AT1G16800			P-loop containing nucleoside t...		Potri.010G253700 [exp]	13.15	0.7546
AT5G56890			Protein kinase superfamily pro...		Potri.018G068100 [exp]	14.24	0.7215
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.019G021500 [exp]	14.83	0.7416
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.004G184900 [exp]	15.36	0.7491
AT5G58160			actin binding (.1)		Potri.006G185501 [exp]	23.15	0.7172
AT1G69220		SIK1	Protein kinase superfamily pro...		Potri.010G157400 [exp]	24.24	0.6751	SIK1.1
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.004G078200 [exp]	25.45	0.7017
AT5G65170			VQ motif-containing protein (....		Potri.005G076600 [exp]	26.72	0.6986
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.005G222500 [exp]	28.14	0.6902

Compare expression of checked genes

Potri.005G026400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.