Plant FIBer expression Database

Potri.005G026450 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G026425
[exp]
52 / 9e-10 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G026450.1 pacid=42804483 polypeptide=Potri.005G026450.1.p locus=Potri.005G026450 ID=Potri.005G026450.1.v4.1 annot-version=v4.1
ATGGGCTATAGCCATCTTATTTCTGCCATTGCTGGCTTCTCTGCGTCGTTCTTTCTCCTCTTGCCGACCTTGAAGCTGTGGCACAAGCAACAAATCACAA
AAGAGAAACTGAGGATTATAGCTGAGGTGTTGGAACATGCTGAAGAGAGGGCTCACAAATTTCAAGAAAGGCATGATCACATACTAGGTCAAATAAGCTC
ATACTATTTGATCAATCAAGAACTCGGAGATGCATTGGCTGGTGCTAGGGCTGCAATGAATGCGGCAATGGAGTTTGCTCTCAGATTGAGAGAAGTGCAA
ATGAGAGTCCTGATCAATTTCCCAGATGAAGCTGATCTTTCAATGTTGGATAGCCCATATGCAAATGCAGCCAGGCCTGGGAACAATTAA
AA sequence
>Potri.005G026450.1 pacid=42804483 polypeptide=Potri.005G026450.1.p locus=Potri.005G026450 ID=Potri.005G026450.1.v4.1 annot-version=v4.1
MGYSHLISAIAGFSASFFLLLPTLKLWHKQQITKEKLRIIAEVLEHAEERAHKFQERHDHILGQISSYYLINQELGDALAGARAAMNAAMEFALRLREVQ
MRVLINFPDEADLSMLDSPYANAARPGNN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G026450
[exp]
0 1
AT4G34090 unknown protein Potri.007G045900
[exp]
4.69 0.9323
Potri.001G177201
[exp]
7.21 0.9138
AT4G21780 unknown protein Potri.004G018600
[exp]
9.69 0.8421
Potri.003G080050
[exp]
10.67 0.8315
Potri.001G178600
[exp]
16.24 0.8551
ATCG00440 ATCG00440.1, ND... NADH:ubiquinone/plastoquinone ... Potri.013G163000
[exp]
16.97 0.8863
AT2G40935 PLAC8 family protein (.1.2.3) Potri.006G024900
[exp]
19.74 0.8147
AT4G25720 ATQC, QCT GLUTAMINYL CYCLOTRANSFERASE, A... Potri.017G146200
[exp]
20.54 0.7392
AT3G27640 Transducin/WD40 repeat-like su... Potri.001G345400
[exp]
21.44 0.8423
AT2G27140 HSP20-like chaperones superfam... Potri.004G191000
[exp]
21.84 0.8982

Potri.005G026450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.