Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62770 491 / 6e-174 ATATG18A autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) AT2G40810 410 / 1e-142 ATATG18C homolog of yeast autophagy 18C (.1.2) AT3G56440 409 / 7e-142 ATATG18D homolog of yeast autophagy 18 (ATG18) D (.1) AT5G05150 290 / 9e-96 ATATG18E ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E, autophagy-related gene 18E (.1) AT4G30510 96 / 1e-22 ATATG18B ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) B, homolog of yeast autophagy 18 (ATG18) B (.1), homolog of yeast autophagy 18 (ATG18) B (.2) AT3G18140 44 / 0.0001 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018400 [exp] 665 / 0 AT3G62770 496 / 6e-176 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.002G207865 [exp] 500 / 4e-177 AT3G62770 596 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.014G132300 [exp] 495 / 3e-175 AT3G62770 565 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.019G062800 [exp] 411 / 1e-142 AT2G40810 609 / 0.0 homolog of yeast autophagy 18C (.1.2) Potri.018G101200 [exp] 121 / 7e-31 AT4G30510 432 / 2e-152 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) B, homolog of yeast autophagy 18 (ATG18) B (.1), homolog of yeast autophagy 18 (ATG18) B (.2) Potri.011G132700 [exp] 42 / 0.0007 AT5G54730 510 / 8e-169 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031500 [exp] 524 / 0 AT3G62770 493 / 1e-173 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10004501 [exp] 519 / 0 AT3G62770 493 / 5e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10015178 [exp] 517 / 0 AT3G62770 489 / 4e-172 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10029900 [exp] 497 / 3e-176 AT3G62770 479 / 2e-168 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10036577 [exp] 486 / 1e-171 AT3G62770 610 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10041353 [exp] 483 / 2e-170 AT3G62770 608 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10003694 [exp] 381 / 6e-131 AT2G40810 580 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10001580 [exp] 377 / 5e-129 AT2G40810 577 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10023022 [exp] 49 / 5e-07 AT3G62770 46 / 7e-07 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10033817 [exp] 44 / 0.0001 AT1G54710 866 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G026600.1 pacid=42803343 polypeptide=Potri.005G026600.1.p locus=Potri.005G026600 ID=Potri.005G026600.1.v4.1 annot-version=v4.1 ATGGCGACCCGACCCGGGTGCGATTTCGAACCCGACCATCCCAAAACCTCTTCAACCGCCGCCGCCATAACCCACAACCCGAATCGAGTAGCAACCCCGC CAATCTACCACCTATCCTTCAACCAAAACCACACCTGCTTCTTAGTTGGACTCCAAAACGGGTTCCGGATCTTCGACACGGACCCATTCAAACCCTCATT CCGCCGCGACATAGACACACACAGCGGCATCGGATTGGTCGCCATGCTTTACCGCAGCAACATCTTCTGCCTAGTCTGTGGCGGACCCGACCCTATGTAC CCCAGAAACAAAGTGATGATTTGGGACGATCATGATTCTCGGTGTGTCGGAGAATTATCGTTCCGGTCAGAGGTGAAAAACGTGAAACTTCGTCGCGATA TGATCGTTGTTGTGTTGAATCAAAAGATCTTTGTTTATAATTTCTTGGACTTGAAGTTATTGAATCAAATTGAGACGGTTTCGAACCCTACTGGACTGTG TGAGATTTCGCATAATTCGTCACCGATGGTTTTGGTTTGTTTAGGGTTGCAAAAGGGGCAAATTAGAGTGGAGAATTTTGGGTCCAAGAAGAGTAAGTTT GTTATGGCGCATGATTCAAGAGTTGTTTGTATGAGTTTAACTCAAGATGGGAGGAGGTTAGCGACGGCGAGCAGTAAAGGGACTTTGATTAGAGTGTTTA ATTCTTTGGATGGTACTTTGTTGCAAGAGGTTAGGAGAGGTGCGGATAGAGCAGATATCTACAGCCTTGCATTCTCGTCCAATGCTCAGTTCCTAGCTGT CTCAAGCGACAAGGGAACTGTACATATCTTTAGTCTCAAGGTTGATTCAGGGTCCCTGCCCTCATTGCCAAATGATAGATCTCACTTTGCATCTGAACCA ATTCATTCTAGACTTTCATCTCTTTCCATTTTCAAAGGGGTATTGCCAAAGTATTTCAGCTCTGAGTGGTCAGTAGCTCGGTTTCGATTACCTGAAGGTT TGCAGTACTGTGTTGGGTTTGGCCACCAGAAGAACACCATTGTCATCATTGGCATGGATGGAAGTTTCTATAGATGTGAGTTTGACCCTGTGACTGGTGG GGAGATGATCCAGCTTGAATATATCAATTTCCTGAACGTGGAGAATTTCTGA
AA sequence Show only first row Show all	>Potri.005G026600.1 pacid=42803343 polypeptide=Potri.005G026600.1.p locus=Potri.005G026600 ID=Potri.005G026600.1.v4.1 annot-version=v4.1 MATRPGCDFEPDHPKTSSTAAAITHNPNRVATPPIYHLSFNQNHTCFLVGLQNGFRIFDTDPFKPSFRRDIDTHSGIGLVAMLYRSNIFCLVCGGPDPMY PRNKVMIWDDHDSRCVGELSFRSEVKNVKLRRDMIVVVLNQKIFVYNFLDLKLLNQIETVSNPTGLCEISHNSSPMVLVCLGLQKGQIRVENFGSKKSKF VMAHDSRVVCMSLTQDGRRLATASSKGTLIRVFNSLDGTLLQEVRRGADRADIYSLAFSSNAQFLAVSSDKGTVHIFSLKVDSGSLPSLPNDRSHFASEP IHSRLSSLSIFKGVLPKYFSSEWSVARFRLPEGLQYCVGFGHQKNTIVIIGMDGSFYRCEFDPVTGGEMIQLEYINFLNVENF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.005G026600 [exp]	0	1
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.001G062800 [exp]	1.41	0.8757
AT3G12350			F-box family protein (.1.2)		Potri.002G117900 [exp]	5.65	0.8349
AT5G25520			SPOC domain / Transcription el...		Potri.018G034500 [exp]	8.36	0.8412
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Potri.012G056200 [exp]	9.79	0.8572
AT1G10280			Core-2/I-branching beta-1,6-N-...		Potri.003G001700 [exp]	10.77	0.7871
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.015G013800 [exp]	12.72	0.8593
AT1G04000			unknown protein		Potri.002G259400 [exp]	12.96	0.8114
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Potri.002G115000 [exp]	17.32	0.8454
AT4G09830			Uncharacterised conserved prot...		Potri.005G196400 [exp]	18.33	0.8169
AT4G13270			Late embryogenesis abundant (L...		Potri.006G159400 [exp]	20.37	0.7796

Compare expression of checked genes

Potri.005G026600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.