Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09070 54 / 5e-09 (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, soybean gene regulated by cold-2 (.1) AT4G15755 43 / 3e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G05440 40 / 0.0001 C2 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018600 [exp] 65 / 8e-13 AT1G09070 157 / 5e-46 soybean gene regulated by cold-2 (.1) Potri.010G024200 [exp] 61 / 1e-11 AT3G16510 135 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G209800 [exp] 50 / 7e-08 AT3G16510 137 / 8e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004500 [exp] 52 / 2e-08 AT1G09070 179 / 2e-55 soybean gene regulated by cold-2 (.1) Lus10029901 [exp] 52 / 2e-08 AT1G09070 172 / 6e-52 soybean gene regulated by cold-2 (.1) Lus10006523 [exp] 43 / 4e-05 AT3G16510 147 / 1e-41 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G026650.1 pacid=42802625 polypeptide=Potri.005G026650.1.p locus=Potri.005G026650 ID=Potri.005G026650.1.v4.1 annot-version=v4.1 ATGGATTACAGAACTCTAGACATTATAACTATAGTGACGTGCTTGAAAGGCCTTAAACTCTCAAAATTGCTCTCCAAAACTCGTGTTGTGGCCTCCATCG TCAGTGGCTCTCTGATTTCCAGGCAAGAAACACCGGTTTGCACATACAAAGGAATAAGCGGTCCAACTTGGGATTATCCGATGAGATTTTACTTGGAAGA TTCAGTGTTCCAGCAGAGTCAATTGATGGTTGTGTTTCGAATCTGGCGCACCCCGATATTCCTTGGTGGAAACCAACTTCTTGGAGAAGTATATTTTCCG GTCAAGCTCCTTTTGGATAATTGGACAGAAGACAAGCAAGCAAAGGAGGGTTCTTGTCCAGTCGTGACTCCATCAGGAAAGCATCGAGGTTGCTTGGTTT TCAAGTATGATTTTGGACATGGTACGATTAGGGGTGCTCCTAAAAAGGTCGATAGGCTCCACCATTCGGCACCATATATTGATTAA
AA sequence Show only first row Show all	>Potri.005G026650.1 pacid=42802625 polypeptide=Potri.005G026650.1.p locus=Potri.005G026650 ID=Potri.005G026650.1.v4.1 annot-version=v4.1 MDYRTLDIITIVTCLKGLKLSKLLSKTRVVASIVSGSLISRQETPVCTYKGISGPTWDYPMRFYLEDSVFQQSQLMVVFRIWRTPIFLGGNQLLGEVYFP VKLLLDNWTEDKQAKEGSCPVVTPSGKHRGCLVFKYDFGHGTIRGAPKKVDRLHHSAPYID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Potri.005G026650 [exp]	0	1
AT1G11480			eukaryotic translation initiat...		Potri.017G041300 [exp]	14.00	0.8283
					Potri.006G034450 [exp]	26.55	0.8222
					Potri.013G018050 [exp]	32.80	0.8189
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Potri.018G069200 [exp]	35.00	0.8184
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.001G042700 [exp]	41.49	0.8171	Pt-HSP70.10
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Potri.015G056900 [exp]	45.13	0.8169	Pt-ATHSP101.1
AT1G67930			Golgi transport complex protei...		Potri.005G203900 [exp]	46.73	0.7423
					Potri.010G096850 [exp]	47.22	0.8140
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Potri.015G057000 [exp]	47.83	0.8167
AT2G17030			F-box family protein with a do...		Potri.009G140000 [exp]	47.87	0.7256

Compare expression of checked genes

Potri.005G026650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.