Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05420 1006 / 0 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 907 / 0 ACBP5 acyl-CoA binding protein 5 (.1) AT5G04420 414 / 4e-138 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT5G18590 221 / 2e-62 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G74150 122 / 4e-29 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G18610 117 / 1e-27 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 100 / 8e-22 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT4G04670 85 / 1e-16 Met-10+ like family protein / kelch repeat-containing protein (.1) AT5G48180 77 / 6e-15 NSP5 nitrile specifier protein 5 (.1) AT2G27210 77 / 3e-14 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018800 [exp] 1177 / 0 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.008G031200 [exp] 427 / 3e-143 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.010G230300 [exp] 413 / 9e-138 AT5G04420 657 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.008G214900 [exp] 246 / 9e-72 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G022000 [exp] 246 / 1e-71 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G013000 [exp] 134 / 1e-32 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 133 / 2e-32 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 112 / 9e-26 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 111 / 2e-25 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029902 [exp] 1032 / 0 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10004499 [exp] 1011 / 0 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10015176 [exp] 978 / 0 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10031497 [exp] 972 / 0 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10037933 [exp] 429 / 6e-143 AT5G04420 648 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10038666 [exp] 425 / 3e-142 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10028825 [exp] 403 / 1e-133 AT5G04420 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10017457 [exp] 397 / 3e-131 AT5G04420 610 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10034163 [exp] 219 / 5e-62 AT5G18590 785 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10043420 [exp] 192 / 7e-52 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0632 [poplar] [flax] FERM_M PF00887 [poplar] [flax] ACBP Acyl CoA binding protein CL0186 [poplar] [flax] Beta_propeller PF13415 [poplar] [flax] Kelch_3 Galactose oxidase, central domain CL0186 [poplar] [flax] Beta_propeller PF13854 [poplar] [flax] Kelch_5 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.005G026900.2 pacid=42805532 polypeptide=Potri.005G026900.2.p locus=Potri.005G026900 ID=Potri.005G026900.2.v4.1 annot-version=v4.1 ATGCAAATGGCGATGGCGAGGTCAAGCTCTGGCCTCGCATATCCTGAGCGATTCTATGCAGCGGCATCATACGCTGGATTTGATGGATCTCACAACTCTA CCACCACTGTCTCTTCTAAATTCCAAAACGACACCGCTCTCCTCCTCTACGCTTTGTACCAGCAGGCGACAATTGGACCGTGTAATGTGCCGAAACCTAG TAGCTGGAAGGCTGTAGAACAAAGCAAATGGAAAAGCTGGCAGGGGCTTGAAAATATGGCTTCCACAGAAGCCATGCGTCTCTTTGTGAAAATACTGGAG GAAGATGATCCAAGTTGGTACTCTAGAGCATCTAACTCTATCTCAGAGTCTGTCACAGACACACAAGTGAATCATTACTCAGATGAGCATGTCATCGAGA ATGGAAACTCTTTCCCAGACACAAAGACCATTTCTACTGAGAATGGAACCCTTGTAGAAACTCAGGATAAAGATGTCGTCTCAGAAGATGTTGGGTCAGT TGCTGTCTATGATCAATGGATTACACCTCCAATAACTGGCCAACTGCCAAAAGCCCGATATGAGCATGGAGCAGCAATTGTTCAAGATAAGATGTACATA TATGGGGGAAATCACAATGGCCGCTATCTCAATGATCTTCATGTGCTAGATTTGAGAAGTTGGTCATGGTATAAGGTCAATTTTAAGGCTGAGAATGAGC CACAGGAGGGACAGTCTCCAGCTAAATTAACTCCTTGTGCTGGCCATTCCTTGATACCATGGGAGAACAAGCTTCTATCAATTGCTGGACATACAAAGGA TCCTTCTGAAACTATCCAGGTCAAGGTATTTGATCTTCAATCTTGTACTTGGTCAACCTTAAAGACTTATGGGAAAGCACCGATCTCACGTGGAGGTCAA TCAGTTACCCTTGTCGGGACAAGCTTAGTGATTTTTGGTGGACAAGATGCGAAGAGATCTCTCTTGAATGATCTGCATATCCTTGACCTAGAAACCATGA CTTGGGATGAAATTGATGCTATTGGGGTGTCTCCATCTCCAAGATCTGATCATGCTGCTGCAGTACATGCCGAGCGTTACCTTCTTATTTTTGGTGGAGG CTCACATGCCACTTGTTTCAATGATCTGCATGTGCTTGATTTGCAAACTATGGAATGGACGAGACCCGCACAACAGGGGGAGATACCTACACCCCGGGCT GGACATGCCGGTGTAACAGTTGGGGAGAATTGGTTTATTGTTGGTGGTGGTGACAACAAGACTGGGGTCTCTGAAACTGCTGTCCTCAACATGTCTACAC TTGGCTGGTCTGTTGTAACTTCTGTTCAAGGGCGTGTTCCTCTTGCCAGTGAGGGCTTGAGTTTGGTCTTGAGCTCTTATAATGGCGAAGATATTCTTGT GTCTTTTGGAGGATATAACGGGCATTACAGCAATGAAGTCAATGTTCTTAAGCCAAGCCACAAATCAACTTTGGAATCAAAAATAGCAGAGACTCCTGTG CCCGACAGTGTTTCTGCTATCCATAACATTACAAATCCCACCAGAGATGTGGACTCTGAATTTGAAGGGGGGCATGAAGGCAAAATTAGGGAAATTGTTA TGGATAACATGGACCAAGGGTCCACGAAATCTAGAGGTGAGGGAACTAGTGAGCATCTTTTAGCTACTTTAAAGGCTGAGAGAGAAGAACTGAATTCTTC ACTCAGCAAGGAGAAGTTGCAAACTCTCCATTTAAAGCAAGAGTTAACTGATGCTGAGACTCGTAACACTGATCTTTACAAGGAGCTCCAATCTGTACGT GGTCAACTCGCTACTGATCAGTCAAGATGTTTCAAACTAGAGGTTGACGTTGCGGAACTACGACAAAAGCTTCAAAATATGGAGGCACTGCAAAAAGAAC TTGAACTCCTGCAACGACAAAAGGCTGCCTCTGAACATGCCTTGAATGCAAATCATAGGCAGGGCTCAGGTGGCGTGTGGGGTTGGCTTGCTGGAACCCC TGACTCTGGCAACCAAGAAGAAGACGATGCGTAA
AA sequence Show only first row Show all	>Potri.005G026900.2 pacid=42805532 polypeptide=Potri.005G026900.2.p locus=Potri.005G026900 ID=Potri.005G026900.2.v4.1 annot-version=v4.1 MQMAMARSSSGLAYPERFYAAASYAGFDGSHNSTTTVSSKFQNDTALLLYALYQQATIGPCNVPKPSSWKAVEQSKWKSWQGLENMASTEAMRLFVKILE EDDPSWYSRASNSISESVTDTQVNHYSDEHVIENGNSFPDTKTISTENGTLVETQDKDVVSEDVGSVAVYDQWITPPITGQLPKARYEHGAAIVQDKMYI YGGNHNGRYLNDLHVLDLRSWSWYKVNFKAENEPQEGQSPAKLTPCAGHSLIPWENKLLSIAGHTKDPSETIQVKVFDLQSCTWSTLKTYGKAPISRGGQ SVTLVGTSLVIFGGQDAKRSLLNDLHILDLETMTWDEIDAIGVSPSPRSDHAAAVHAERYLLIFGGGSHATCFNDLHVLDLQTMEWTRPAQQGEIPTPRA GHAGVTVGENWFIVGGGDNKTGVSETAVLNMSTLGWSVVTSVQGRVPLASEGLSLVLSSYNGEDILVSFGGYNGHYSNEVNVLKPSHKSTLESKIAETPV PDSVSAIHNITNPTRDVDSEFEGGHEGKIREIVMDNMDQGSTKSRGEGTSEHLLATLKAEREELNSSLSKEKLQTLHLKQELTDAETRNTDLYKELQSVR GQLATDQSRCFKLEVDVAELRQKLQNMEALQKELELLQRQKAASEHALNANHRQGSGGVWGWLAGTPDSGNQEEDDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Potri.005G026900 [exp]	0	1
AT2G21410		VHA-A2	vacuolar proton ATPase A2 (.1)		Potri.005G234100 [exp]	4.47	0.8941
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.008G090000 [exp]	6.78	0.9047
AT1G60070			Adaptor protein complex AP-1, ...		Potri.006G092800 [exp]	11.83	0.8905
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.013G156900 [exp]	12.36	0.8781
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Potri.010G167300 [exp]	15.96	0.7972
AT1G31780			unknown protein		Potri.004G236600 [exp]	20.44	0.8778
AT5G26660	MYB	ATMYB4, ATMYB86	myb domain protein 86 (.1)		Potri.012G084100 [exp]	21.90	0.8685
AT5G11980			conserved oligomeric Golgi com...		Potri.006G225500 [exp]	22.71	0.8939
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.006G087500 [exp]	30.78	0.8870	LAC110c
AT3G11130			Clathrin, heavy chain (.1)		Potri.009G073300 [exp]	32.72	0.8673

Compare expression of checked genes

Potri.005G026900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.