Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09060 169 / 1e-48 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT4G21430 50 / 3e-07 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) AT3G13960 49 / 5e-07 GRF ATGRF5 growth-regulating factor 5 (.1) AT4G37740 49 / 6e-07 GRF ATGRF2 growth-regulating factor 2 (.1) AT2G22840 48 / 1e-06 GRF ATGRF1 growth-regulating factor 1 (.1) AT4G24150 46 / 4e-06 GRF ATGRF8 growth-regulating factor 8 (.1) AT2G06200 46 / 5e-06 GRF ATGRF6 growth-regulating factor 6 (.1) AT5G53660 42 / 0.0001 GRF ATGRF7 growth-regulating factor 7 (.1) AT3G52910 39 / 0.001 GRF ATGRF4 growth-regulating factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G019000 [exp] 299 / 5e-96 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.004G032700 [exp] 57 / 1e-09 AT4G21430 522 / 1e-169 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.011G041400 [exp] 56 / 3e-09 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.006G143200 [exp] 49 / 9e-07 AT3G13960 188 / 7e-56 growth-regulating factor 5 (.1) Potri.018G065400 [exp] 47 / 2e-06 AT3G13960 181 / 3e-53 growth-regulating factor 5 (.1) Potri.003G065000 [exp] 47 / 2e-06 AT3G13960 200 / 4e-61 growth-regulating factor 5 (.1) Potri.001G169100 [exp] 47 / 3e-06 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1) Potri.013G077500 [exp] 46 / 4e-06 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.001G082700 [exp] 46 / 7e-06 AT4G24150 156 / 1e-41 growth-regulating factor 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017092 [exp] 161 / 9e-46 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10037812 [exp] 160 / 2e-45 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10020084 [exp] 54 / 2e-08 AT4G21430 529 / 2e-172 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10033441 [exp] 48 / 2e-06 AT3G13960 191 / 3e-56 growth-regulating factor 5 (.1) Lus10000473 [exp] 48 / 2e-06 AT3G13960 187 / 5e-55 growth-regulating factor 5 (.1) Lus10037668 [exp] 47 / 2e-06 AT3G13960 156 / 1e-45 growth-regulating factor 5 (.1) Lus10008268 [exp] 47 / 4e-06 AT4G24150 156 / 3e-42 growth-regulating factor 8 (.1) Lus10033236 [exp] 47 / 4e-06 AT4G24150 151 / 1e-40 growth-regulating factor 8 (.1) Lus10020352 [exp] 46 / 6e-06 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10004455 [exp] 46 / 7e-06 AT3G13960 150 / 8e-42 growth-regulating factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [poplar] [flax] WRC WRC
Representative CDS sequence Show only first row Show all	>Potri.005G026950.1 pacid=42804498 polypeptide=Potri.005G026950.1.p locus=Potri.005G026950 ID=Potri.005G026950.1.v4.1 annot-version=v4.1 ATGCTTGATTTCTCACTCCTATTTTTTGCTATAATGGATCACCCACGATCATCCTTGGCTAATGGTGAGGAGAATGGTGGTGGGATTCCTGATGACTTGC GCTGCAAGAGGTCAGATGGGAAACAGTGGAGATGCACTGCCATGTCTATGCCAGATAAAACTGTTTGTGAGAAGCATTATATTCAGGCGAAGAAGAGGGC AGCTAATTCTGCCTTGAGAGCCAGTCTGAAGAAGGCCAAAAGAAGATCGCTAGGTGAAAGAGATATTTACTTGGAGAGCAAGGGTGATGATTTTGATATA CCACTTGTGAACATGAAAGTTGAAGAGGAACAACCGTTTTTTGTTCCATCAAAGAGGCATAAGGAGAAAGTACCAAAAAGTCAGTCTCGCTATTCTCCTG AAACACTTATAAGGAGTTTGTCTGGTCGGAATTCTCAAAAACTAAATGATGATTCTCAAAGAGATTTCAAGTTTGAAGAGAATCGGAGGTCATATAAGAC GCCTCCTCTTTTAACTATGGATTCATCCAAGAGTATATCACAAAGAAGCTTTGATGCCAGTGCTATGACAGGAATACTCTGA
AA sequence Show only first row Show all	>Potri.005G026950.1 pacid=42804498 polypeptide=Potri.005G026950.1.p locus=Potri.005G026950 ID=Potri.005G026950.1.v4.1 annot-version=v4.1 MLDFSLLFFAIMDHPRSSLANGEENGGGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSALRASLKKAKRRSLGERDIYLESKGDDFDI PLVNMKVEEEQPFFVPSKRHKEKVPKSQSRYSPETLIRSLSGRNSQKLNDDSQRDFKFEENRRSYKTPPLLTMDSSKSISQRSFDASAMTGIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09060			Zinc finger, RING-type;Transcr...		Potri.005G026950 [exp]	0	1
AT4G16447			unknown protein		Potri.011G086300 [exp]	5.47	0.8103
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.003G218300 [exp]	5.91	0.7995
AT1G22110			structural constituent of ribo...		Potri.005G169900 [exp]	6.48	0.7575
					Potri.013G104501 [exp]	9.38	0.7019
AT1G34065		SAMC2	S-adenosylmethionine carrier 2...		Potri.002G063901 [exp]	13.00	0.5899
AT2G29620			unknown protein		Potri.009G043000 [exp]	23.23	0.5760
AT4G27790			Calcium-binding EF hand family...		Potri.015G010300 [exp]	23.49	0.5184
AT4G22300		SOBER1	SUPPRESSOR OF AVRBST-ELICITED ...		Potri.004G001701 [exp]	27.34	0.5234
AT3G20190			Leucine-rich repeat protein ki...		Potri.004G170274 [exp]	37.81	0.4946
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Potri.008G128301 [exp]	43.12	0.4799

Compare expression of checked genes

Potri.005G026950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.