Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09060 758 / 0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT4G00990 455 / 4e-149 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G11950 394 / 3e-125 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G62310 365 / 3e-114 transcription factor jumonji (jmjC) domain-containing protein (.1) AT3G07610 323 / 2e-97 IBM1 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) AT4G21430 258 / 5e-74 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G019000 [exp] 1260 / 0 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.015G012800 [exp] 441 / 9e-136 AT4G00990 508 / 4e-157 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.011G009700 [exp] 425 / 7e-135 AT1G11950 863 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.004G006200 [exp] 424 / 2e-134 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G091200 [exp] 412 / 1e-129 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.005G082901 [exp] 397 / 4e-123 AT3G07610 702 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.004G032700 [exp] 241 / 7e-68 AT4G21430 522 / 1e-169 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.011G041400 [exp] 208 / 2e-56 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017092 [exp] 911 / 0 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10037812 [exp] 903 / 0 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10020033 [exp] 392 / 4e-124 AT1G62310 843 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10002391 [exp] 389 / 2e-121 AT3G07610 607 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10015260 [exp] 376 / 5e-118 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10027890 [exp] 367 / 4e-113 AT3G07610 578 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10006741 [exp] 340 / 4e-105 AT4G21430 440 / 1e-141 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10020084 [exp] 333 / 5e-101 AT4G21430 529 / 2e-172 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10025380 [exp] 204 / 9e-56 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10004602 [exp] 195 / 3e-55 AT3G07610 313 / 1e-97 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF02373 [poplar] [flax] JmjC JmjC domain, hydroxylase
Representative CDS sequence Show only first row Show all	>Potri.005G027000.5 pacid=42804743 polypeptide=Potri.005G027000.5.p locus=Potri.005G027000 ID=Potri.005G027000.5.v4.1 annot-version=v4.1 ATGGTAAAGTTGCAGGTGAGAATACGAGAGATACCTGTTCTAGACAAATTGCAATATCTCCACTGCCTATTATCTTCAGTGCTTCCTATAGTTAAGCAGA TCCATCATGAACAATGCTTTGAAGTAGAGCTGGAACAGAGGCTGTGTGGAACTTATATAGATCTTGTCCGGGCCAAATTGAATGCCGATGAGCAGATGTG CTGCAATATATGTAGGATACCAATCATTGATTATCATCGGCATTGTGCAAATTGCTCGTATGATCTGTGCCTCCATTGCTGTCAAGATCTTCGAGGAGCA TCAAAACATGGTGTTGGAACTGAAGTGAATGAAAACCAGATTGACAGGAGAATTCAAGACGAAGAGACCCTATCAAAATTTGTGATAGACTCCCGAGGAA GAATAAATTTATCAGATAAGTACCAAGGCTGGAAGGCAAACAATGATGGCAGCATTCCATGCCCTCCAAAGGAGCACGGTGGTTGTAATTACTCATCATT GAACCTAAGCTGTATTTTCAAGATGAATTGGGTAGCAAAACTTGTGAAAAATGTGGAGGAAATGGTCAGTGGCTGCAAGGTCTATGATGCTGACACTCCA CAGAAATCTGGGTTGAGTGATTCCACACTCTGCCAGCATGCTCATAGAGATGATAGTGATGATAATTTCTTATATTGCCCCTTATCTGAAGATATAAAAG TTGATGGGATAAACAAGTTTAGAAAACATTGGGTCAGAGGCGAACCTGTTATTGTGAAGCAGGTATTTGACAGCTCATCCATATCAAGCTGGGATCCAAT GGCCATATGGAAGGGGATCCGGGAAACATCAGACGAGAAAATAAAAGATGAAAACAGAACAGTGAAGGCCATAGATTGCTTACACTGGTCTGAGGTTGAT ATTGAACTTGATCAGTTTATCAGAGGATACTCCGAGGGACGAATCCGGGAAAATGGTTCACTAGAGATGTTGAAGTTGAAGGATTGGCCTTCCCCCAGTG CTTCTGAAGAGTTCTTATTATACCAGAGACCCGAATTTATCAGTAAACTGCCTTTCCTTGAATTCATCCATTCGAGGTTGGGTATTTTAAATGTTGCTGC AAAGTTGCCCCATTACTCTTTGCAGAATGATGTAGGACCTAAGATTTGTATATCATATGGGAGCCATGAGGAACTTGGTGTGGGCAATTCTGTAATAAAT CTTCATTTCAAAATGCGTGACATGGTATACTTATTGGTGCATACATGTGAAGCAAAGGCAAAACATTGCCAGGAGAATGGCTCATTTGACCCAGAAAAGA GCTTGGAGGAGGGAAGGTTGCCTGATATATCACTTGGTGGGCGTAATATACAAGAAGATGAAGTGAAGACAGCTGCAGAAAAGAATGAGAAAATGGAGGA TCAAGGGGTTGATAATACCACTAGCATTGAAGAGCTTGAGAGAATTGAAGATCAAGGAGCTGAAAGAACCACCAGTGTTCCAGAGGTTGAGAGAACGGAA ACCATCAGAATGGAAGAGGTTGAGGGAATGGAGGGTCAGCAGTTGAGGAAAAATCATGATGATATCCCTGTAGAGATTCACACAGGAGTTAGTTGGGATG TCTTTCGTCGGCAGGATGTTCCTAAGTTAACTGACTATTTGCGAACACGCTGTGAGGACCTTTGGAAGCCTGACAATGCAGTGCATGATTTTGCCACACG TCCCCTTTATGATGGAACAGTTTTCCTAAATGGGTTTCATAAGAGACGATTGAAAGAAGAATTTGGAGTTGAACCATGGTCATTTGAACAGCACCTGGGG CAAGCTGTATTCATCCCTGCTGGCTGCCCTTTCCAAGTGAGGAATCTTCAGTCCAATGTTCAGTTGGGTCTTGATTTCTTATCTCCTGAAAGTTTGGGGG TGGCTTCTAGATTGGCAGCAGAAATTCGCTGTCTTCCAAATGAACATGAAGCAAAACTTCAAGTTTTGGAGGTGGGTAAGATGTCACTCTATGCTGCTAG TTCAGCCATTAAAGAAGTCCAGAAATTGGTGCTTGATCCTAAGCTTGGAGCAGAAATTGGATTTGAGGATCCTAATTTAACTGCAGCAGTTTCTGAGAAC TTGAAGAAGGTTGCTAAGCCAAGACAGATAAGTTGCGCTTAA
AA sequence Show only first row Show all	>Potri.005G027000.5 pacid=42804743 polypeptide=Potri.005G027000.5.p locus=Potri.005G027000 ID=Potri.005G027000.5.v4.1 annot-version=v4.1 MVKLQVRIREIPVLDKLQYLHCLLSSVLPIVKQIHHEQCFEVELEQRLCGTYIDLVRAKLNADEQMCCNICRIPIIDYHRHCANCSYDLCLHCCQDLRGA SKHGVGTEVNENQIDRRIQDEETLSKFVIDSRGRINLSDKYQGWKANNDGSIPCPPKEHGGCNYSSLNLSCIFKMNWVAKLVKNVEEMVSGCKVYDADTP QKSGLSDSTLCQHAHRDDSDDNFLYCPLSEDIKVDGINKFRKHWVRGEPVIVKQVFDSSSISSWDPMAIWKGIRETSDEKIKDENRTVKAIDCLHWSEVD IELDQFIRGYSEGRIRENGSLEMLKLKDWPSPSASEEFLLYQRPEFISKLPFLEFIHSRLGILNVAAKLPHYSLQNDVGPKICISYGSHEELGVGNSVIN LHFKMRDMVYLLVHTCEAKAKHCQENGSFDPEKSLEEGRLPDISLGGRNIQEDEVKTAAEKNEKMEDQGVDNTTSIEELERIEDQGAERTTSVPEVERTE TIRMEEVEGMEGQQLRKNHDDIPVEIHTGVSWDVFRRQDVPKLTDYLRTRCEDLWKPDNAVHDFATRPLYDGTVFLNGFHKRRLKEEFGVEPWSFEQHLG QAVFIPAGCPFQVRNLQSNVQLGLDFLSPESLGVASRLAAEIRCLPNEHEAKLQVLEVGKMSLYAASSAIKEVQKLVLDPKLGAEIGFEDPNLTAAVSEN LKKVAKPRQISCA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09060			Zinc finger, RING-type;Transcr...		Potri.005G027000 [exp]	0	1
AT1G17450			B-block binding subunit of TFI...		Potri.003G064000 [exp]	3.60	0.8069
AT3G17450			hAT dimerisation domain-contai...		Potri.002G188400 [exp]	8.12	0.8047
AT5G15680			ARM repeat superfamily protein...		Potri.017G106100 [exp]	8.71	0.7821
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.010G019150 [exp]	11.61	0.7842
AT1G13030			sphere organelles protein-rela...		Potri.008G185100 [exp]	18.00	0.7616
AT1G61690			phosphoinositide binding (.1)		Potri.004G030500 [exp]	20.07	0.7258
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.016G128900 [exp]	23.49	0.7637
AT1G20670			DNA-binding bromodomain-contai...		Potri.009G167500 [exp]	23.81	0.7656
AT5G22450			unknown protein		Potri.004G203500 [exp]	25.69	0.7681
AT1G69550			disease resistance protein (TI...		Potri.004G202683 [exp]	29.32	0.7566

Compare expression of checked genes

Potri.005G027000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.