Plant FIBer expression Database

Potri.005G027100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G05410 259 / 3e-87 Photosystem II reaction center PsbP family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004498
[exp]
216 / 1e-71 AT3G05410 209 / 4e-68 Photosystem II reaction center PsbP family protein (.1.2)
Lus10029903
[exp]
203 / 1e-65 AT3G05410 286 / 2e-97 Photosystem II reaction center PsbP family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0619 Mog1p_PsbP PF01789 PsbP PsbP
Representative CDS sequence
>Potri.005G027100.2 pacid=42804253 polypeptide=Potri.005G027100.2.p locus=Potri.005G027100 ID=Potri.005G027100.2.v4.1 annot-version=v4.1
ATGGCATTGCAACATCACTTTCTAGCATGCAAAAATGCCTCCATCCAAAAGATTTACATGACTCAATCATCTGGGGACAGGAAGGAGAGTTTCCCAGAGG
TGCCTAGGCCTCCAGCCGAACAGTTTGCACCTCTGGCATCGACTTTTCAGCGTCGTCTACTTGTTGGTGTTGGTTCAGCTTCTCTGGTGGCTGTTGGTGC
AAATTTTGGTGGGATTACTAGTTTTCTTCTTGGATTATCACCGGAAAGCGGTCGAAATGTTAAGCTTGATGTGCTTTATCCAATTGGAGGGTATAGCCGA
TGCATTGGGACAAATGAAGGATTTGAATTCATATACCCCGCAACTTGGGTTGGAGACCAAAGGCTGCTTTATCGAGCAGCTGAGAAGACAGAATATGAGA
GATCACTCGATCCACCTCCACTGAATAATGGGAAATCTAGTGATGGGCGGCGCAAGAATGTGAATGAACCGGTTGTTGCATTTGGCCCCCCAGGTTCAAG
TGGTGAACTCAATGTTAGTGTCATTGTCTCACAAGTCCCTCCTGACTTCTCGATTGAAGCATTTGGAGGGCCTAAGGAGGTGGGAGAAGCTGTGGTCCGG
ACAATCACAGGATCACGCCTTGACGTGAAAGGTACTTTGACTGAATCAAGTTTAAGAGAGGACTCTGAGGAAAGTTAA
AA sequence
>Potri.005G027100.2 pacid=42804253 polypeptide=Potri.005G027100.2.p locus=Potri.005G027100 ID=Potri.005G027100.2.v4.1 annot-version=v4.1
MALQHHFLACKNASIQKIYMTQSSGDRKESFPEVPRPPAEQFAPLASTFQRRLLVGVGSASLVAVGANFGGITSFLLGLSPESGRNVKLDVLYPIGGYSR
CIGTNEGFEFIYPATWVGDQRLLYRAAEKTEYERSLDPPPLNNGKSSDGRRKNVNEPVVAFGPPGSSGELNVSVIVSQVPPDFSIEAFGGPKEVGEAVVR
TITGSRLDVKGTLTESSLREDSEES

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G05410 Photosystem II reaction center... Potri.005G027100
[exp]
0 1
AT1G60000 RNA-binding (RRM/RBD/RNP motif... Potri.010G065600
[exp]
1.41 0.9797 RNP1.1
AT1G60000 RNA-binding (RRM/RBD/RNP motif... Potri.008G172100
[exp]
2.00 0.9821 RNP1.2
AT3G54900 ATGRXCP, CXIP1 GLUTAREDOXIN, CAX interacting ... Potri.014G141200
[exp]
3.46 0.9711
AT3G17470 ATCRSH Ca2+-activated RelA/spot homol... Potri.010G002400
[exp]
5.74 0.9527
AT3G12930 Lojap-related protein (.1) Potri.011G142900
[exp]
6.32 0.9711
AT3G08010 ATAB2 RNA binding (.1) Potri.009G059600
[exp]
8.83 0.9654
AT4G24660 ZF_HD ATHB22, MEE68, ... ZINC FINGER HOMEODOMAIN 2, MAT... Potri.005G158800
[exp]
12.80 0.9510
AT4G02920 unknown protein Potri.002G215800
[exp]
14.07 0.9574
AT2G29760 OTP81 ORGANELLE TRANSCRIPT PROCESSIN... Potri.005G012600
[exp]
14.83 0.9599
AT5G11450 PPD5 PsbP domain protein 5, Mog1/Ps... Potri.006G246500
[exp]
15.49 0.9585

Potri.005G027100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.