Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09040 387 / 7e-120 unknown protein AT2G47820 360 / 4e-111 unknown protein AT1G09050 363 / 7e-111 unknown protein AT1G55050 323 / 3e-96 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G019300 [exp] 1508 / 0 AT1G09040 384 / 1e-118 unknown protein Potri.010G023900 [exp] 438 / 8e-140 AT2G47820 381 / 2e-119 unknown protein Potri.008G210200 [exp] 431 / 7e-137 AT2G47820 375 / 4e-117 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004495 [exp] 514 / 3e-165 AT1G09050 376 / 1e-113 unknown protein Lus10029906 [exp] 504 / 1e-161 AT1G09040 385 / 6e-117 unknown protein Lus10037506 [exp] 394 / 2e-123 AT1G09050 359 / 7e-112 unknown protein Lus10006519 [exp] 373 / 1e-115 AT1G09040 350 / 1e-108 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G027300.2 pacid=42805296 polypeptide=Potri.005G027300.2.p locus=Potri.005G027300 ID=Potri.005G027300.2.v4.1 annot-version=v4.1 ATGGAGGAGGAATCAATTCAGCTAGATCATGATTGCAATTCCACTGAAGAATCATCTACTATGCAGTTAGTTCCTCCAACATCTCCTGAGATAAGTGGTG TGTGTGGGCATCCAATAGAGAACCCTCGAGTTGGTGATGAGTATCAAGCAGAAATTCCATCCATGATATCACAAGCAGAGCATCTACAACTTGTAACAAT CCCTTTTGATTCAGATGGAATATCCAGCGCTTCCCATTCCTTTCTAATAGGTTTACCAGTCCCAATCATGTGGCTGGATGATCATAAGGTTACTAGTGGA GAGGATGAAGGGTGTAGATCTCTGAGCCACCCTGGAGATGCGGTTCTTAAAAACGAGTCCAGCAAATCCAAAAAATGCAAAAAGCATTGTACTGTGAAGA AGGAAGGTTCAGAACTCAATGCTGAATTATTGGATGATGTTAAGGAATTGAAACCAGCGACCTTTCAATCCAAGGTGGCAGGCAAAGAAAACTTAGATCA GCTGTGTAAAAGCAAAAACTATTATCCTCTTCCTGGTTTACTGCATAACCCTTGGAGAAATGCAGATGTAGATGGTTTTATTCTTGGTTTATATATATTT GGAAAAAATTTTGTTCAGATGCAGAGATTCATAGACAAGGAGGTGGGGGAAATACTGTCATTTTATTATGGGAAATTTTATATGTCTGATGCGTATCGTC GATGGTCAGATACTCGGAAGACAAAAAAGAAGAAATGTGTATATGGACATAGAATTTTCACAGGGTGGAGGCAACAGGAACTGTTCTCTCGTCTGGATCC TCATGTCCCAGTGCATTTTCGAAATACTTTCCAAGAGGTCTCTATGGAATTTACCAAGGGTAAAATCTCACTAGAAGATTATGTATTCAAATTAAAGGCC ACTGTTGGCATTCAAGTTCTTGTAGAAGCTGTTGGTATCGGTAAGGGGAAAGATGATCTCACTGGTCTTGCCATGGAACCTGTAAAAAGCAATCATTTGT TTCCTGATTGTCCAGCTGGTAAAGATTACTCCTCTCTTACAGCCAGTGAGATAATCAAGCTTTTGACTGGGGGCTTCCGTTTGAGCAAAGCTCGCTCTAA TGACATTTTTTGGGAAGCTGTTTGGCCCCGTTTGCTGGCAAGAGGGTGGCACTCTGAGCAACCACAGAATCAGGGTTATGTTGATACCAATCACTGTCTT GTTTTTCTCGTTCCTGGCATTAAGAAATTTTCAAGAAGAAAACTTGTGAAAGGTAATCACTACTTTGACTCTGTCAGTGATGTTTTGAGCAAAGTTGCAT CAGAACCAACGCTTATTGAGCTTGAAGCTGAAGAAACTAGAGGCAGCATCTGCTATGAAGAGGATGGCTGGGATCCAGGAGTACCATCAAACCTGGATGA TCAATCCATTTGTCAACCCCGCCAATTTCTTAAACCTCAGGTTTCTAAACGCAATCTGAACCATGTGAAGTTCACTGTTGTGGATTCAAGTTTGGACGGA GGGAAAAAGTCCAAGGTGAAAGAAATGAGATACTCTCCAGATGATTTGAAAGTTATGCCCTTGTTCACCACTCTTTCAGGTAGAACTCCAAGGATTTTTT TGGAGAGCACACTGGATAAAAATGATCTAGATGCTCTTGGTATGCCATTGGATGGTGAAGAGAAAATGAATGATGTTGACTGCAATGAGGGTGGTACATT TCATGCATGCAGCTCGAACTCTACGAAGTTCACCATTGTAGACACCAGTTTGTTACTTGGAGGAATATCAGTAAGGCCAAGAGAACTAAGATGTTTACCA GTTGAGTATGACTGTGCTTCTGAAATGACCAATGCAACTGAGAATGAAACCGATTCCTCTGACAATTCACTGGTTCAGCATGCACCAGATGCAGCTAATA GACCCAACTATAGAAGGGGTATATTTGAAAAGAGCTACCAGGACGAAAGCTCCGAATTGAAAGAACACCAGCCAACGAGAACTTTAAAGCACCAATCAAG TCGAAGGGCAAAATCCAGCCAGTCAAATTACTTGGTCCCTCCAGTGAAACGACAGAGACTAACTGTTTGTTCTGATACAGAGATGAGCGATGTCATTGAG AATTTCTCTGGAGGCATGCGGTCAAAACAAGGGAGGGTTTGTTTAGCTTTGAAAGCACCAAGTGCTGGCAGCAAAGCCTTTAAAGTCCATGGTTATCGAA AGAAATCATCATCAACTAAACCCTCAGCTAAATGTGATCCAGAAGAGGAGAATGGCGGGGGGATGTTGAGTGCAAATTATTTTGGTTTAGGAAATTCTCA GAGAGAAAATGTGGAACATCAATCCCCGCTTTTGATTGATCTGAATCTACCTCAAGTTGCATTGGACTCTAATAATGGAGAAGTGGTGCCCATGGAAGTG GAAAACATCCAAAGAATAAATGCCAATAATAAATGTTATCCATCTCAGTCAGATAATACCAATACCGACATGTTGAGTACCTCTGTTGATGTTACTCCTG CAGCAGAGGAACCTGATATGAACCCCAGAAGGCAAAGCACAAGAAACAGGCCAATGACCATTAAAGCATTGGCAGCTCTTGAATATGGATTCTTGGAAGT GAAGAAGAGGCCAAAGAACGATGGAGTTCGCACAGACAAGAAATCCTGTTTTAGAGCCCTTCCTCGGGTCCAACAACATAGTAGTAGAAGTAACATAAAG GCATGCAGTGTCGGTGCTGGTATTGTGGATTTGAAGGAAGAAAGGGATGCTAGTGGAGCCTTCATTGTTGAATGA
AA sequence Show only first row Show all	>Potri.005G027300.2 pacid=42805296 polypeptide=Potri.005G027300.2.p locus=Potri.005G027300 ID=Potri.005G027300.2.v4.1 annot-version=v4.1 MEEESIQLDHDCNSTEESSTMQLVPPTSPEISGVCGHPIENPRVGDEYQAEIPSMISQAEHLQLVTIPFDSDGISSASHSFLIGLPVPIMWLDDHKVTSG EDEGCRSLSHPGDAVLKNESSKSKKCKKHCTVKKEGSELNAELLDDVKELKPATFQSKVAGKENLDQLCKSKNYYPLPGLLHNPWRNADVDGFILGLYIF GKNFVQMQRFIDKEVGEILSFYYGKFYMSDAYRRWSDTRKTKKKKCVYGHRIFTGWRQQELFSRLDPHVPVHFRNTFQEVSMEFTKGKISLEDYVFKLKA TVGIQVLVEAVGIGKGKDDLTGLAMEPVKSNHLFPDCPAGKDYSSLTASEIIKLLTGGFRLSKARSNDIFWEAVWPRLLARGWHSEQPQNQGYVDTNHCL VFLVPGIKKFSRRKLVKGNHYFDSVSDVLSKVASEPTLIELEAEETRGSICYEEDGWDPGVPSNLDDQSICQPRQFLKPQVSKRNLNHVKFTVVDSSLDG GKKSKVKEMRYSPDDLKVMPLFTTLSGRTPRIFLESTLDKNDLDALGMPLDGEEKMNDVDCNEGGTFHACSSNSTKFTIVDTSLLLGGISVRPRELRCLP VEYDCASEMTNATENETDSSDNSLVQHAPDAANRPNYRRGIFEKSYQDESSELKEHQPTRTLKHQSSRRAKSSQSNYLVPPVKRQRLTVCSDTEMSDVIE NFSGGMRSKQGRVCLALKAPSAGSKAFKVHGYRKKSSSTKPSAKCDPEEENGGGMLSANYFGLGNSQRENVEHQSPLLIDLNLPQVALDSNNGEVVPMEV ENIQRINANNKCYPSQSDNTNTDMLSTSVDVTPAAEEPDMNPRRQSTRNRPMTIKALAALEYGFLEVKKRPKNDGVRTDKKSCFRALPRVQQHSSRSNIK ACSVGAGIVDLKEERDASGAFIVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09040			unknown protein		Potri.005G027300 [exp]	0	1
AT1G80440			Galactose oxidase/kelch repeat...		Potri.001G178300 [exp]	7.28	0.8490
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.001G303100 [exp]	8.94	0.7392
AT3G62550			Adenine nucleotide alpha hydro...		Potri.013G009800 [exp]	10.19	0.8149
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Potri.002G202400 [exp]	10.67	0.8123
AT1G03220			Eukaryotic aspartyl protease f...		Potri.019G065100 [exp]	16.00	0.8048
					Potri.004G147966 [exp]	17.88	0.7981
AT3G29970			B12D protein (.1)		Potri.004G117300 [exp]	25.63	0.7952
AT5G54165			unknown protein		Potri.012G021602 [exp]	26.73	0.7897
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.012G006800 [exp]	28.10	0.7905
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.002G154200 [exp]	28.91	0.7817	NAC087

Compare expression of checked genes

Potri.005G027300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.