Plant FIBer expression Database

Potri.005G027500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004492
[exp]
73 / 3e-18 ND /
PFAM info
Representative CDS sequence
>Potri.005G027500.1 pacid=42802736 polypeptide=Potri.005G027500.1.p locus=Potri.005G027500 ID=Potri.005G027500.1.v4.1 annot-version=v4.1
ATGGCATCCTTGTTAGTCTCCATCAGTTTCCCTATGCCTCTCTCCGCCCCTAAATTCTCATTCAAGGAATTACAACTAAGGAAATCAGCTGTTACGAGAC
TTTCAGGCCAAGCAACATCTGGGACAGCAACGAACCTTTTGGTCCCTTGCAACGCAACTGGAGAGATACTTTCTGTGAATCAGAGCTGCGGTGGATGTCT
AGCAACTCCCACCAACCATTTTTACCGACTTGTTTCTAGTTGTATGCATGTAAGTTCTTGTACTCACAAAATAATAACTGGTTATTGGGTGGGGCCAGAT
ATAGATGATGGTTGGGGATTTGTAGAAGGTTTCGTTAATCAAATTACTTGA
AA sequence
>Potri.005G027500.1 pacid=42802736 polypeptide=Potri.005G027500.1.p locus=Potri.005G027500 ID=Potri.005G027500.1.v4.1 annot-version=v4.1
MASLLVSISFPMPLSAPKFSFKELQLRKSAVTRLSGQATSGTATNLLVPCNATGEILSVNQSCGGCLATPTNHFYRLVSSCMHVSSCTHKIITGYWVGPD
IDDGWGFVEGFVNQIT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G027500
[exp]
0 1
AT3G59980 Nucleic acid-binding, OB-fold-... Potri.017G000200
[exp]
4.00 0.9243
AT1G48460 unknown protein Potri.014G038800
[exp]
5.65 0.9231
AT4G24660 ZF_HD ATHB22, MEE68, ... ZINC FINGER HOMEODOMAIN 2, MAT... Potri.012G040900
[exp]
7.74 0.9131
AT5G08400 Protein of unknown function (D... Potri.010G255300
[exp]
12.24 0.9140
AT4G24175 unknown protein Potri.005G240800
[exp]
14.83 0.9173
AT4G29400 Protein of unknown function (D... Potri.014G148300
[exp]
16.97 0.9212
AT3G11500 Small nuclear ribonucleoprotei... Potri.006G211100
[exp]
17.60 0.8768
AT4G26055 unknown protein Potri.010G204200
[exp]
17.66 0.8593
AT3G19508 unknown protein Potri.001G299200
[exp]
21.42 0.8599
AT5G53070 Ribosomal protein L9/RNase H1 ... Potri.012G017300
[exp]
21.93 0.8706

Potri.005G027500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.