Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27620 428 / 4e-151 CYCH;1 cyclin H;1 (.1) AT5G48640 75 / 2e-15 Cyclin family protein (.1) AT5G48630 72 / 1e-14 Cyclin family protein (.1.2) AT1G35440 64 / 9e-12 CYCT1;1 cyclin T1;1 (.1) AT5G45190 61 / 6e-10 Cyclin family protein (.1.2) AT4G19600 56 / 1e-08 CYCT1;4 Cyclin family protein (.1) AT4G19560 47 / 8e-06 CYCT1;2 Cyclin family protein (.1) AT2G26430 45 / 7e-05 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G246800 [exp] 68 / 7e-13 AT5G48630 382 / 6e-136 Cyclin family protein (.1.2) Potri.014G194900 [exp] 64 / 1e-11 AT5G48630 346 / 1e-121 Cyclin family protein (.1.2) Potri.003G148800 [exp] 50 / 1e-06 AT5G45190 635 / 0.0 Cyclin family protein (.1.2) Potri.007G067100 [exp] 49 / 2e-06 AT5G45190 564 / 0.0 Cyclin family protein (.1.2) Potri.005G097400 [exp] 48 / 8e-06 AT5G45190 550 / 0.0 Cyclin family protein (.1.2) Potri.002G032300 [exp] 44 / 0.0001 AT5G45190 333 / 6e-109 Cyclin family protein (.1.2) Potri.001G081600 [exp] 43 / 0.0003 AT5G45190 636 / 0.0 Cyclin family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037811 [exp] 483 / 4e-173 AT5G27620 435 / 7e-154 cyclin H;1 (.1) Lus10017091 [exp] 472 / 1e-168 AT5G27620 439 / 2e-155 cyclin H;1 (.1) Lus10002354 [exp] 70 / 1e-13 AT5G48630 397 / 2e-141 Cyclin family protein (.1.2) Lus10003151 [exp] 70 / 2e-13 AT5G48630 402 / 2e-143 Cyclin family protein (.1.2) Lus10040640 [exp] 49 / 3e-06 AT5G45190 587 / 0.0 Cyclin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain CL0065 [poplar] [flax] Cyclin PF16899 [poplar] [flax] Cyclin_C_2 Cyclin C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G027700.2 pacid=42803405 polypeptide=Potri.005G027700.2.p locus=Potri.005G027700 ID=Potri.005G027700.2.v4.1 annot-version=v4.1 ATGGCCGATTTCCAATCCTCAAGTCACAAAGCCAAGTGGATCTTCACCCCTCAACAGTTGGCCGAGAAATATAAAGCTACTAATAATAGAGCGAAACAAA TGTTAGAGAAGTATGGAACGACAAGAATGAGAGTAGATGTTGATGGGTCATTGTCATATCCAGAACCTCAAGTTAACATGACAGAGAATGCTGATAAGCA TTCTCGTTCAAAACCAATAAGTGTTGAGGAAGAACAATTTATGCGAGTATACTATGAGTATAAACTTCGAGAAGTGTGTAGTGCATTCTATTTTCCTCAT AAAATTCAGGCAACTGCACTCCTATACTTTAAAAGGTTTTATCTTCAATGGTCAGTCATGGAGCATGATCCAAAACATGTAATGTTAACCTGCATCTATG CAGCATGCAAGATAGAAGAAAATCATGTGTCTGCGGAGGAGCTTGGTAAGGGGATTTCACAGGATCATCAAATGATTCTCAATTACGAGATGATAGTTTA TCAGAGTTTGGAATTTGATCTTATTGTCTATGCACCATATCGATCTGTTGAAGGTTTTGTTGCTGATATAGAGGAATTCTGCCATCCAACAGATGAAAAT ATTGAAAAGCTGAAGGAAATTGCAGTGGCAGAGATTGACAAAATCATGCTCACTGATGCACCCGTTATGTTCCCTCCTGGGCAGTTGGCATTGGCTGCTC TGCAGAGTGCAAATGAGGTGCATAGAGTTCTTGATTTTGAGAGATATCTCGAGAGTGTCCTCTCTCGTCAGAATTCTGCACACATGATTTCAGAGATCAG TGAATCTCTACATGCCGTCGAGAAATGGGTGAGGAAATACAGTTTCCCTACGGATAAGGATATGAAGCACATAAATCGGAAGCTGAAATCATGCTGGGGT CATAACTCACACGATGACAATAAGAAAAGGGAGAAGAAATCAAAACACAAGTCCCATAAGAGTTCGAATGAAATGCAAAATGGCCCAGGACTGACTTAA
AA sequence Show only first row Show all	>Potri.005G027700.2 pacid=42803405 polypeptide=Potri.005G027700.2.p locus=Potri.005G027700 ID=Potri.005G027700.2.v4.1 annot-version=v4.1 MADFQSSSHKAKWIFTPQQLAEKYKATNNRAKQMLEKYGTTRMRVDVDGSLSYPEPQVNMTENADKHSRSKPISVEEEQFMRVYYEYKLREVCSAFYFPH KIQATALLYFKRFYLQWSVMEHDPKHVMLTCIYAACKIEENHVSAEELGKGISQDHQMILNYEMIVYQSLEFDLIVYAPYRSVEGFVADIEEFCHPTDEN IEKLKEIAVAEIDKIMLTDAPVMFPPGQLALAALQSANEVHRVLDFERYLESVLSRQNSAHMISEISESLHAVEKWVRKYSFPTDKDMKHINRKLKSCWG HNSHDDNKKREKKSKHKSHKSSNEMQNGPGLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27620		CYCH;1	cyclin H;1 (.1)		Potri.005G027700 [exp]	0	1
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Potri.002G205700 [exp]	1.73	0.7637	Pt-GRP2.1
AT5G18580		FASS2, TON2, GD...	GORDO, FASS 1, EMBRYO DEFECTIV...		Potri.008G215300 [exp]	7.74	0.7512
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Potri.001G277900 [exp]	13.41	0.7631	Pt-SAD1.2
AT3G27640			Transducin/WD40 repeat-like su...		Potri.001G345400 [exp]	14.89	0.7586
AT3G10915			Reticulon family protein (.1.2...		Potri.019G057400 [exp]	25.49	0.7148
AT4G14385			unknown protein		Potri.005G223900 [exp]	26.00	0.7363
AT4G14615			unknown protein		Potri.010G079100 [exp]	26.38	0.7382
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Potri.012G139900 [exp]	27.56	0.6968
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.019G039500 [exp]	33.16	0.7391
					Potri.001G174000 [exp]	36.40	0.7466

Compare expression of checked genes

Potri.005G027700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.