Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02570 143 / 2e-38 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) AT1G43140 136 / 4e-36 Cullin family protein (.1) AT1G59790 125 / 2e-33 Cullin family protein (.1) AT1G02980 126 / 2e-32 ATCUL2, CUL2 cullin 2 (.1) AT1G59800 103 / 6e-26 Cullin family protein (.1) AT1G26830 53 / 1e-07 CUL3A, ATCUL3A, ATCUL3 cullin 3A, cullin 3 (.1) AT1G69670 49 / 3e-06 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G027900 [exp] 467 / 5e-168 AT4G02570 143 / 2e-38 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G217300 [exp] 148 / 3e-40 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.010G023800 [exp] 145 / 3e-39 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.013G020000 [exp] 137 / 2e-38 AT4G02570 172 / 2e-48 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.001G117200 [exp] 132 / 2e-34 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.003G115500 [exp] 129 / 1e-33 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G217700 [exp] 118 / 2e-31 AT4G02570 225 / 3e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G224075 [exp] 88 / 1e-21 AT4G02570 218 / 4e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.010G093200 [exp] 62 / 2e-10 AT1G26830 1345 / 0.0 cullin 3A, cullin 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028917 [exp] 139 / 9e-37 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10032200 [exp] 138 / 1e-36 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10024562 [exp] 134 / 3e-35 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10004334 [exp] 128 / 6e-33 AT4G02570 1279 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10037188 [exp] 57 / 8e-09 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1) Lus10036739 [exp] 57 / 1e-08 AT1G26830 1335 / 0.0 cullin 3A, cullin 3 (.1) Lus10012835 [exp] 56 / 2e-08 AT1G26830 1320 / 0.0 cullin 3A, cullin 3 (.1) Lus10030485 [exp] 55 / 4e-08 AT1G26830 1317 / 0.0 cullin 3A, cullin 3 (.1) Lus10009610 [exp] 47 / 4e-06 AT1G69670 284 / 1e-91 ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00888 [poplar] [flax] Cullin Cullin family
Representative CDS sequence Show only first row Show all	>Potri.005G027800.2 pacid=42804113 polypeptide=Potri.005G027800.2.p locus=Potri.005G027800 ID=Potri.005G027800.2.v4.1 annot-version=v4.1 ATGGATGTTGACATGATGTTGAATGAGAAGCTAAAGATGATAGATGATGCAATTACGAAGAAGAAGACGATAATGGATTGTCACCCTGAGGTTCCATTAA CACCTACGGCAAAAATGAACGCTTACGACTCTGTATACACTTTGTGCAATCAGAAAAGTCGAGACTACAGCAACCTGCTTTATGAGAAGTACACGAACTG TTTAACTGAGATCATTCAAGAAAGGGCACTTCCTGTGTTAATGGACAAACATGGCACAGAACTTTTAACAGAAGTCATGCGATTGTGGTCGGAGTATAAG GAATTTGCAAGCTTTTTGTCGAAAATCTTTGCATACCTGGATAGGTACTACATCCATAGGAAAGGACTCCTATCACTTGCTGACTCCATGAGATATTACT TCTGCAATCTGGTCTGTGATAAGCTATTCAGTAAATTGCAGGAAGCAATGATGAGGCTGATCATTCAAGAGCGTGAAGGGGGGCAGATTGATCGGAACCT ACTAAAGAATGTATCTTATTTACTTTTTGAGGTGGGGGGAATAGGAACCATCAACTGTTATGAAAAAATCGAGCAGATAATGCTAGCAGAAGTTGCTGCC CACTACTCTCAGCTATCTCTGGAGTGGTGGTTTTGGGGTGATTCCTTTTCCAACTACCTGCGGAAGGTTGATTGGTGCTTGAACCAGGAGGAAGCCAGAG CAGAAGTCTACCCATCCCAAACCACCAAAACAAAAATACTGGATGTGATGAAATATGTTTTGCTGGAAAGAAACGCAAAGAAGTGGGCTCAGAAGCAAAA CGCCGAGGGGATGGCAGCTGAAGATCAGGAGCTGTTATCCAAATATGCTAGCTTGAAGCTTGAATAG
AA sequence Show only first row Show all	>Potri.005G027800.2 pacid=42804113 polypeptide=Potri.005G027800.2.p locus=Potri.005G027800 ID=Potri.005G027800.2.v4.1 annot-version=v4.1 MDVDMMLNEKLKMIDDAITKKKTIMDCHPEVPLTPTAKMNAYDSVYTLCNQKSRDYSNLLYEKYTNCLTEIIQERALPVLMDKHGTELLTEVMRLWSEYK EFASFLSKIFAYLDRYYIHRKGLLSLADSMRYYFCNLVCDKLFSKLQEAMMRLIIQEREGGQIDRNLLKNVSYLLFEVGGIGTINCYEKIEQIMLAEVAA HYSQLSLEWWFWGDSFSNYLRKVDWCLNQEEARAEVYPSQTTKTKILDVMKYVLLERNAKKWAQKQNAEGMAAEDQELLSKYASLKLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.005G027800 [exp]	0	1
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.005G027900 [exp]	1.41	0.8622
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.002G182300 [exp]	1.73	0.8957
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.002G182000 [exp]	5.29	0.8419
					Potri.008G087651 [exp]	5.91	0.8265
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Potri.008G135800 [exp]	6.00	0.8019
AT5G45160			Root hair defective 3 GTP-bind...		Potri.015G112600 [exp]	6.48	0.8482
AT2G40390			unknown protein		Potri.010G183100 [exp]	11.83	0.7854
AT2G47680	C3HZnF		zinc finger (CCCH type) helica...		Potri.017G031800 [exp]	21.16	0.7196
AT1G60420			DC1 domain-containing protein ...		Potri.010G060300 [exp]	21.44	0.7236
AT1G60420			DC1 domain-containing protein ...		Potri.010G060100 [exp]	26.38	0.7787	Pt-PDI.6

Compare expression of checked genes

Potri.005G027800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.