Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62900 176 / 4e-44 CW-type Zinc Finger (.1) AT1G02990 158 / 7e-39 unknown protein AT4G15730 143 / 3e-34 CW-type Zinc Finger (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G020200 [exp] 1919 / 0 AT3G62900 174 / 1e-43 CW-type Zinc Finger (.1) Potri.002G209409 [exp] 286 / 3e-78 AT3G62900 285 / 7e-78 CW-type Zinc Finger (.1) Potri.014G132900 [exp] 218 / 4e-57 AT3G62900 322 / 2e-89 CW-type Zinc Finger (.1) Potri.011G144500 [exp] 46 / 0.0002 AT1G19100 114 / 5e-26 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.004G035300 [exp] 45 / 0.0005 AT4G32010 483 / 3e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040919 [exp] 230 / 1e-60 AT3G62900 307 / 6e-85 CW-type Zinc Finger (.1) Lus10009815 [exp] 226 / 2e-59 AT3G62900 301 / 4e-83 CW-type Zinc Finger (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07496 [poplar] [flax] zf-CW CW-type Zinc Finger
Representative CDS sequence Show only first row Show all	>Potri.005G028700.2 pacid=42803481 polypeptide=Potri.005G028700.2.p locus=Potri.005G028700 ID=Potri.005G028700.2.v4.1 annot-version=v4.1 ATGGGAGAGACTGAGATTGAAGAGGGAGAGGCGTGTGATTACATGGACAATGGTGATCAGAACTTTGATATTGATGTGGCTCTCTCTTACCTTGATGATA GGATTCAGGACATCTTGGGGCAGTACCAAAAAGAATTTGAAGGTGGAGTTTCTGCAGAGACTTTGGGTGCAAGATTTGGTGGTTATGGTTCGTTTTTACC TACTTACCAGCGTTCTCCTTCTATACGGTCGAATCCAGTAACCCAGCGGAAAGTACAAAGCCATGGCATGCTACCACCTTCTCATGATGATCAGCTGACA GAGGGTGCCTCTCAGAACTCCACAAGCTCATTACATGAGACCGTTTCTGCAAGACCTGCAGCCGCTTTGAGAATTTCCTCTCCACTGCCTTTAGCAAGGC CTTTGCCTGAGGATAGGTTAGTTAAAATTCAAAGTTCGAGAGAATATGTTTCTGGTTATGAACCACTTCAACGTCCAGTTAACCAGTCGGACCAGAAAAT GCTGAAGCTACGAATCAAAGTGGGGTCAGATAATTGTTTGCCAGAGCAGAAAATTTCAGCAATCTACAGTAATCTTGGCCTGGACATGTCTCCATCATTA TCATCAGAGGACACTGACAGCCCCTCTGAATGGGAGAGGGATTTTCCAGATTCTCTAGAGGAACAAATGGATTCTCCAACTTGCATTGTCAGGATTATGA CCTCTTCTCCTATACCAAGTGGTGCAATGTTGTCACCTCTTCATGATTGTTTGCTTAATTTATCAGAACAGAAAGATTCTTTGGACCATGAAAGAACAGT ACCTGTGCAAGAGTTCTCTGTCCTGTGGGCTGACGAGAAAGTGCCTGTCAAGAAGCAAAAGAAGCCAAGTGATAGACGTGTGAGGTTGGTGGAGCTGAAG AATGAACACTTTTATGATCCACCCAATTGTTTTAGTGCCTTTTTGAAGAATGAATCAAGCATGGAGACCTCAAATGGAAACCATATGTTATCTGATGCAA GAAATCACCCTCCTGGATCCAAAACTGCTAAAATGGGTGGAGTAGCTGCTGGAACAGGTACAAAATTCAGAATCAATGTGAGTGGGGCAAAAGAGGAAAC ATTTAGCCAAAAAGCTTGCAAGATGCATGAAGTAAGTGCGAAGGCTACTTTGACCAGAAAAGTTCTTAAAGATAAAAAATTAGGCTGTGTCCCAAGAGAC AATGGGAGCGAAGGTGATAAAAGTCTTGATTTGTCTAAAGAAGATTACAGCATGCCTGAGGGAATGAGAAAATGTAGAGACGGAACCTTGGATCTTACAA AACAGAAGTTTGAAAAGAAGAAAACATCCCACTTGCATGATGATATGAAGGTATCTCACGGGGAAAAACAGCTATCTGCTGGCAAAAAGAAACCTAAGGG AAGCAAATATGATCGTATCTCTACTGACAAGTCAAATAATAGCATGAGGATCAATTTGTCTGCAGAGCCAAAAGAAAAGATCTTTCAAAAAAGCAGCCTT CCTTGTAGAAGTAAAGGGGATAAAGCATTGCACGAAAACTTGAGAAAGGTCAAAGTTAAACATCCTGTTTTGATTGGTGACAGAAAAGCAGGGAGAAGTG AATCTAGAAACCATCTGCTGGGAACTTCTGTTGGAGATGAGACAAGGGACTGTAAGCGTGAGGTACATGAGAAAAAAACCCTTGCTTTCAGAAACAAATC AAAGTTGAGTTCAGTTGATAAAAAAAACAGTTTGGTTTCAACTTCTAAAGCAAATTTAAGAGGAGACATCAATGGTGGTGTGCCATCTGCTGGCCCACTT CCTATGGAGGTGGCACCATATCTTATAGAGGAAAATTGGGTGTGTTGTGACAAGTGTCACAAGTGGCGGCTTCTACCATATGGTACAAACCCTGACCAGC TTCCACAGAAATGGCTGTGCACCATGCTTGACTGGCTGCCTGGAATGAACTGTTGTACTGTTAGTGAGGAGGAGACAACGGATACTCAGCGTGCACGGTG TCGACTCTCTGTTGCAGGGAACCATGATGGCCGGCTAAGCCATTCTGTCAGCATTGAATCTTCAATTACCTTCATTAATACCAGGCATGATCTTGATCAA AATCCACAAGATCTTAGCTTTAGTGGTGGAAAGAAGAAACATGAAATTAAAGAAGTGTCTAATCCAGCTCAGTATAGTCTTTCTAAGAAGTTGCTGATCT CAACAAGGAAGAATGAACATGTCTCTATTGAAAGAAGGTTAAAAAACAGAAGCTTGCCTTCTTGGGAGAAAAAGTTGGAGAAAAGATTGGGTGATGTGCA GCCACAGAAATCAAAGACCAAGAGAGAAGCTGATCAAGAAAGTTGCAAGCTTTCCAAAAAAGCAAGGACAGACAGTATGCACTTTGCGGAAGAAGATCAT AATACTGGTGGATTCTCAAAGAAAGAAATGGGAAGTAATGATAAAAAGAATTCATCTTCCAGAGAAATGAGGTGTCTCGCAAAGAATTCCACAAATCTTT ATGTTGAAAAACATAACCAGTTTCAGAAGACACTGGTTACAGAGGATCAAGATACAATGGGTATTGAGAGGAAGAAGAGAAAGTCTAAAGACTGGATGGA CAGTCAGATCTATCAAGGTAACCATTCTGGTAATAGGCTAAATAGCTGTATTTCCATGGAGGAGACAAGTTGGAGCGAATGCAGAAAAGAAAAGAAGCCA AGAAAATGTAAATTTGAAGAAAAGGTCTCTAGTGCAAGCAAGGGTGTTTGCAAACTGTTTGAAAAAGATAAGATGAATTATTTATCCCAATCAACTGATG CTGGTAAGAATTCAGAAAGAAGGGATTTGAGAGACTTCCAAGATGTTAAGGGCTCACCTGTGGAGTCAGTCTGTTCTTCACCTTCGAGGATTTCTAACCG AGGCAGCCCTAGAAGGACCTCTTCAGGTGATCATGGTAACACAGACATTGGTTTTTATCATTTCAGTGGCCAAACAAAATCCTCAGAAGGTGAACGTGTT GGTTTAAGTAACTGGTCTGGGACCTCAAGGAAGGAAAATGCTCCTGTTTCTGCACCTATCAATGATGATGAAGTTGAGAAACATTATGCTGGTCAGAAGG TTTCTTCCATCAAAATTCTAAATAATAGTAATAGAGAGGATAACCAATTTAGATGTGAGGGATATGAGGCCTCACTTGAGAAAATGGATGCTGTTTTTCA AAAGGATTGCAATTCAGCTTCACATCATAATGTTCTGCAGAACTGCAGCAGCAGTAGATCTTTGGACATGCTTGACAAAATTAATCAAGTGGAAAAGGCT GCAGGGAAATGGAAATCATTGGATTTCTTATTTTGTGGTGATAAAATGGAAAATCAGTCTTGGAAAAATAGTGAAAATGATGCATTGGAAGTTGATGGTT CTAGTTTTGAAGACTTGGCAAGGGCTCCAAGACAACTTGGAAAGGATGATGGTCGGAATGGGTTTCAAGATGTTACGCGAAGGTTTCCTTTGCCTGATGC CAGCAACACTATTGCATCAAATCATATCAGAAATTATTTCTTTAGTCAGGTAGCAAATGATGCTTTGGAAGGAGCCAAGGATCTTAAGCATTCAACAGAT TCTCTTAAGGTTTCTGAATCAGGCCTTCAAAGTACTGAGTTATTCTTTCAGGCAGCTTTGAAATTTCTTCATGGGGCATCCCTTTTTAATCCTCATAACA ACAATAGCACCAACAGTGGGGAGATGACATCAGCTGAAATGTATGTTCGTGCTGCAAAACTGTGCGAATATTGTGCTTCTGAATTTGAGAGATTCAATGC CTTGGCATATGCTTTTTTGGCATACAAATGCATTGAAGTGGCATATATGCGGGTAGTCCATTCCAATGACCTCACTGCAAGCAGGGATCTGAATGAACTG CGAACAGCATTAAAAAGGGTTTCTCCAGTTGAGTCCCCATCTTCTTCTGACTCTTATGTTGAGAACCTAAACAGTGAAGTAAAAGTGGAGAATAGAAATA TAACTAAGGATGTTGGTTGTTCTCCAGCAGCTACAGCTTGTATCATTGCTGCTAGAAACCAGCCCAGCTTTGTTCGGTTGCTTAATTTTGCAGAAGATGT GAACCTTGCAATGGAAGCCTCAAGGAAATCCCAGGCTGCCTTTGCAGCTGCTGAAATAATTCTTGCAGAGACAGGCAATACTGAGGGTATTTCTTCCATT AAGAAAGTTCTTGATATAGGCTTCCATGATGTAGAGGGGCTATTGCGGTTGATACGCCTTGCAATAGAGAGCCTTCACAAAACTCCTTGA
AA sequence Show only first row Show all	>Potri.005G028700.2 pacid=42803481 polypeptide=Potri.005G028700.2.p locus=Potri.005G028700 ID=Potri.005G028700.2.v4.1 annot-version=v4.1 MGETEIEEGEACDYMDNGDQNFDIDVALSYLDDRIQDILGQYQKEFEGGVSAETLGARFGGYGSFLPTYQRSPSIRSNPVTQRKVQSHGMLPPSHDDQLT EGASQNSTSSLHETVSARPAAALRISSPLPLARPLPEDRLVKIQSSREYVSGYEPLQRPVNQSDQKMLKLRIKVGSDNCLPEQKISAIYSNLGLDMSPSL SSEDTDSPSEWERDFPDSLEEQMDSPTCIVRIMTSSPIPSGAMLSPLHDCLLNLSEQKDSLDHERTVPVQEFSVLWADEKVPVKKQKKPSDRRVRLVELK NEHFYDPPNCFSAFLKNESSMETSNGNHMLSDARNHPPGSKTAKMGGVAAGTGTKFRINVSGAKEETFSQKACKMHEVSAKATLTRKVLKDKKLGCVPRD NGSEGDKSLDLSKEDYSMPEGMRKCRDGTLDLTKQKFEKKKTSHLHDDMKVSHGEKQLSAGKKKPKGSKYDRISTDKSNNSMRINLSAEPKEKIFQKSSL PCRSKGDKALHENLRKVKVKHPVLIGDRKAGRSESRNHLLGTSVGDETRDCKREVHEKKTLAFRNKSKLSSVDKKNSLVSTSKANLRGDINGGVPSAGPL PMEVAPYLIEENWVCCDKCHKWRLLPYGTNPDQLPQKWLCTMLDWLPGMNCCTVSEEETTDTQRARCRLSVAGNHDGRLSHSVSIESSITFINTRHDLDQ NPQDLSFSGGKKKHEIKEVSNPAQYSLSKKLLISTRKNEHVSIERRLKNRSLPSWEKKLEKRLGDVQPQKSKTKREADQESCKLSKKARTDSMHFAEEDH NTGGFSKKEMGSNDKKNSSSREMRCLAKNSTNLYVEKHNQFQKTLVTEDQDTMGIERKKRKSKDWMDSQIYQGNHSGNRLNSCISMEETSWSECRKEKKP RKCKFEEKVSSASKGVCKLFEKDKMNYLSQSTDAGKNSERRDLRDFQDVKGSPVESVCSSPSRISNRGSPRRTSSGDHGNTDIGFYHFSGQTKSSEGERV GLSNWSGTSRKENAPVSAPINDDEVEKHYAGQKVSSIKILNNSNREDNQFRCEGYEASLEKMDAVFQKDCNSASHHNVLQNCSSSRSLDMLDKINQVEKA AGKWKSLDFLFCGDKMENQSWKNSENDALEVDGSSFEDLARAPRQLGKDDGRNGFQDVTRRFPLPDASNTIASNHIRNYFFSQVANDALEGAKDLKHSTD SLKVSESGLQSTELFFQAALKFLHGASLFNPHNNNSTNSGEMTSAEMYVRAAKLCEYCASEFERFNALAYAFLAYKCIEVAYMRVVHSNDLTASRDLNEL RTALKRVSPVESPSSSDSYVENLNSEVKVENRNITKDVGCSPAATACIIAARNQPSFVRLLNFAEDVNLAMEASRKSQAAFAAAEIILAETGNTEGISSI KKVLDIGFHDVEGLLRLIRLAIESLHKTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62900			CW-type Zinc Finger (.1)		Potri.005G028700 [exp]	0	1
AT2G01130			DEA(D/H)-box RNA helicase fami...		Potri.010G117800 [exp]	2.82	0.8930
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Potri.008G081200 [exp]	5.65	0.8684
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Potri.013G006000 [exp]	7.41	0.8789	MOM.2,1
AT1G64310			Tetratricopeptide repeat (TPR)...		Potri.015G082283 [exp]	8.77	0.8620
AT3G47790		ABCA8, ATATH7	ATP-binding cassette A8, ABC2 ...		Potri.013G123401 [exp]	8.83	0.8740
AT5G17910			unknown protein		Potri.019G044500 [exp]	11.83	0.8630
AT2G24350			RNA binding (RRM/RBD/RNP motif...		Potri.012G145100 [exp]	12.36	0.8682
AT5G24350			unknown protein		Potri.015G008500 [exp]	13.19	0.8382
					Potri.013G116750 [exp]	15.19	0.8728
AT5G43740			Disease resistance protein (CC...		Potri.001G432200 [exp]	15.96	0.8519

Compare expression of checked genes

Potri.005G028700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.