Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06540 606 / 0 AthREP Rab escort protein (.1) AT5G09550 121 / 2e-29 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) AT3G59920 106 / 2e-24 ATGDI2 RAB GDP dissociation inhibitor 2 (.1) AT2G44100 104 / 8e-24 AT-GDI1, ATGDI1 guanosine nucleotide diphosphate dissociation inhibitor 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G030000 [exp] 988 / 0 AT3G06540 602 / 0.0 Rab escort protein (.1) Potri.007G115300 [exp] 115 / 3e-27 AT5G09550 785 / 0.0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) Potri.017G001200 [exp] 106 / 1e-24 AT2G44100 776 / 0.0 guanosine nucleotide diphosphate dissociation inhibitor 1 (.1.2) Potri.007G146600 [exp] 106 / 2e-24 AT2G44100 777 / 0.0 guanosine nucleotide diphosphate dissociation inhibitor 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010760 [exp] 112 / 2e-26 AT5G09550 778 / 0.0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) Lus10035634 [exp] 113 / 3e-26 AT5G09550 778 / 0.0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) Lus10027094 [exp] 112 / 3e-26 AT3G59920 800 / 0.0 RAB GDP dissociation inhibitor 2 (.1) Lus10008341 [exp] 112 / 3e-26 AT3G59920 800 / 0.0 RAB GDP dissociation inhibitor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00996 [poplar] [flax] GDI GDP dissociation inhibitor
Representative CDS sequence Show only first row Show all	>Potri.005G028900.1 pacid=42802763 polypeptide=Potri.005G028900.1.p locus=Potri.005G028900 ID=Potri.005G028900.1.v4.1 annot-version=v4.1 ATGGGTGAGCCCCCACCATATCCGCAAATTGAACCAACTACCTTCGACCTGATTGCTGTGGGCACTGGTTTAGCAGAATGCATTGTTGCTGCTGCAGCTT CTGCTTCTGGAAAAACTGTCCTTCACCTTGACACTAACCCATTCTATGGGTCCCATTACTCCTCTCTCTCGGTCCCGGAACTCACATCTTTCCTTATTTC CAATTCTACAGCTTCCTCACCACCATCTTCCACCTCAACCACAACTGACATCCCTGATTACTCCATTGTAAATCTCACCACTCAGCCGGTATATTCAGAT GTTGAGATTTCCTGTTTTTATCCTGAACTATTGGAAGAAAACTTACGGAAGTTCAATTTGGACTTATGTGGACCAAGGGTGTTATTTTGCGCCGACAAGT CAATTGATCTTATGTTAAAATCTGGAGCAAGTAATTATGTGGAGTTCAAGAGTATTGATGCCAGTTTTGTTGGTGATGAGAATGGAAAGTTATGGAATGT GCCAGATTCCAGAGCTGCCATATTTAAGGATAAGAGTTTGACTCTGATGGAAAAGAATCAGTTGATGAGGTTTTTCAAGCTGGTGCAAGGGCACTTGGAT GCCACAGTGGCGGCGGGTTCTTCTGGTAATGATGGGATTGGGAATGGGAATGATGAAGAGGAAGGTAAGACGAAGATTTCAGATGAGGATTTGGAGAGGC CATTTGTTGAGTACTTGTCAAAAATGCGGTTGCCTCCAAAGATTAGATCGATTATTCTGTATGCTATAGCTATGGCAGATTATGATCAAGATGACATGGG GGTTTGCCAAAATTTGCTCAAGACTAAAGATGGAATAGATCGTTTGGCTCTATACCAGTCATCAGTTGGGAGGTTTACAAATGCTTCCGGGGCCCTAATT TATCCCATTTATGGTCAAGGGGAACTGCCACAAGCCTTTAGCCGCCGCTCTGCTGTCAAAGGTTGCATTCACGTTCTGCGAATGCCAGTGACTGCGTTAC TTATGGAAAAGGATAGTGGGAGTTACAAAGGTGTTCGATTGGCTTCTGGCCAGGACATATTTAGCCAGAAGCTGGTTCTGGATCCATCCTTTACACTTGC CTCACCATCAGCCTCTCCATCGGATCTTCTGCATGAAAGTTTTAACTTTTTGAGCACCAGAGATGTTAAAGGGAAGGTGGCCAGAGGGATATGCATCACA CGAAATTCCTTGAAGCCAGATACATCAAATCTTCTGGTTGTATACCCCCCTCGATCCCTGTACCCTGAGCAGATTACATCAATTCGAGCTCTCCAAATAA GTGGCAACTTGGCTGTTTGTCCTTTGGGCATGTTTGTGCTCTATCTTTCAGCTTTGTGTGATGATGCCATTCAAGGGAAGAGGTTACTAAATGCAGCTAT GAATGCCCTTCTGACTTTTCCTGATTCTGTAAATTCTGAAAGCAGTTCCACAGTTCAGAGTGAGAATACTGAAGAGAAACCCAGTGTCATTTGGAGCGGG TTGTATATTCAGGAGATGTCTACGGGTCAATTTGATTCTATCAACTTTGCTCCCATGCCCGATGGAAATCTGAATTACAACGATATATTAGATGCAGCTT TGAAGCTCTTTCAGGAGATGTATCCAAATGAAGAAAAATTCCCAGAGACAACTCCACCTGAGAATTCCGAGGATGATATTGAACTCACTCTAGAGACCTA G
AA sequence Show only first row Show all	>Potri.005G028900.1 pacid=42802763 polypeptide=Potri.005G028900.1.p locus=Potri.005G028900 ID=Potri.005G028900.1.v4.1 annot-version=v4.1 MGEPPPYPQIEPTTFDLIAVGTGLAECIVAAAASASGKTVLHLDTNPFYGSHYSSLSVPELTSFLISNSTASSPPSSTSTTTDIPDYSIVNLTTQPVYSD VEISCFYPELLEENLRKFNLDLCGPRVLFCADKSIDLMLKSGASNYVEFKSIDASFVGDENGKLWNVPDSRAAIFKDKSLTLMEKNQLMRFFKLVQGHLD ATVAAGSSGNDGIGNGNDEEEGKTKISDEDLERPFVEYLSKMRLPPKIRSIILYAIAMADYDQDDMGVCQNLLKTKDGIDRLALYQSSVGRFTNASGALI YPIYGQGELPQAFSRRSAVKGCIHVLRMPVTALLMEKDSGSYKGVRLASGQDIFSQKLVLDPSFTLASPSASPSDLLHESFNFLSTRDVKGKVARGICIT RNSLKPDTSNLLVVYPPRSLYPEQITSIRALQISGNLAVCPLGMFVLYLSALCDDAIQGKRLLNAAMNALLTFPDSVNSESSSTVQSENTEEKPSVIWSG LYIQEMSTGQFDSINFAPMPDGNLNYNDILDAALKLFQEMYPNEEKFPETTPPENSEDDIELTLET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06540		AthREP	Rab escort protein (.1)		Potri.005G028900 [exp]	0	1
AT1G25570			Di-glucose binding protein wit...		Potri.010G129300 [exp]	5.65	0.7050
AT1G53040			Protein of unknown function (D...		Potri.011G119300 [exp]	6.78	0.7338
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Potri.005G257300 [exp]	13.22	0.6925
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.001G117200 [exp]	14.86	0.6729
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Potri.012G043000 [exp]	15.16	0.7009	Pt-SKOR.2
AT3G13690			Protein kinase protein with ad...		Potri.014G038300 [exp]	15.19	0.6835
AT4G00570		NAD-ME2	NAD-dependent malic enzyme 2 (...		Potri.014G079900 [exp]	19.79	0.6363
AT1G75850		VPS35B	VPS35 homolog B (.1)		Potri.005G242100 [exp]	21.35	0.6351
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.007G040300 [exp]	26.49	0.6229
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Potri.006G099302 [exp]	28.77	0.6982

Compare expression of checked genes

Potri.005G028900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.