Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52970 615 / 0 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT2G45560 382 / 9e-128 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45550 372 / 1e-123 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45570 370 / 3e-123 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G61040 361 / 8e-120 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT1G33720 349 / 8e-115 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45580 344 / 5e-113 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT5G07990 322 / 3e-104 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G40890 301 / 3e-96 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT5G44620 299 / 1e-95 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G029700 [exp] 920 / 0 AT3G52970 612 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G030100 [exp] 914 / 0 AT3G52970 617 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029600 [exp] 910 / 0 AT3G52970 609 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029800 [exp] 909 / 0 AT3G52970 626 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.006G094700 [exp] 448 / 1e-153 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.003G118200 [exp] 382 / 5e-128 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G113900 [exp] 372 / 3e-124 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 372 / 6e-124 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 364 / 6e-121 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021135 [exp] 656 / 0 AT3G52970 634 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10029930 [exp] 598 / 0 AT3G52970 557 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10021136 [exp] 427 / 3e-145 AT3G52970 436 / 5e-149 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10025749 [exp] 425 / 2e-144 AT3G52970 441 / 9e-151 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10002839 [exp] 368 / 3e-122 AT3G52970 390 / 4e-131 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10021137 [exp] 360 / 3e-119 AT3G52970 387 / 6e-130 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10008935 [exp] 355 / 4e-117 AT2G45550 476 / 5e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028897 [exp] 352 / 4e-116 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028898 [exp] 350 / 2e-115 AT2G45550 488 / 1e-169 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028852 [exp] 346 / 6e-114 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.005G029200.2 pacid=42804395 polypeptide=Potri.005G029200.2.p locus=Potri.005G029200 ID=Potri.005G029200.2.v4.1 annot-version=v4.1 ATGGACTATGAAATTGCAGGTCTGGTTCTAGCAGTCTTGCTATGGGTTGCATGGGCAGTGGTGACTCAACGTCGTTACCGTCGTTCAGAAGAGCAAGGGC AGCTACCACCAGGGCCTAGACCACTGCCAGTGGTTGGCAACATCTTCCTGTTGGGTTGGGCACCACACGAGTCTTTTGCTAATTTGGCTCGTGTTCATGG TCCAATCATGACCATTTGGCTCGGGTCCATGTGTAACGTGGTCATTTCCTCGAGCGAAGTGGCTCGTGAGATGTTCAAGAATCATGATGCGGTGTTGGCT GGGAGAAAAATCTACGAGGCTATGAGAGGTGATTTTGGCAATGAAGGGTCTATAATCACAGCCCAATATGGACCGCATTGGCGCATGTTAAGGCGCTTAT GCACCACCGAATTCTTTGTGACTAGCCGCCTTGATGCCATGCAGGGTGCACGAACTAGGTGCATCGATGGCATGCTGCTATACATAGAAGATGGTAGCGC CAATGGCACTAGCGCTATTGACCTTGGGAGATACATTTTCTTGATGGCTTTTAATCTTATTGGCAACCTCATGTTTTCTAAAGATTTATTGGACCCAAAA TCGGAGAAGGGAGCAAAGTTTTTTCAGCATGCAGGTAAGGTCATGGAGTTGGCAGGTAAGCCTAACATGGCTGATTTTTTGCCAATTTTAAGATGGCTGG ATCCACAAGGTATAAGGAGGAAGACACAGTTCCATGTAGCAAGAGCCTTTGAGATTGCAGGAGGGTTCATCAAAGAAAGAACAGAGAGTACGCAAAAGGA AAATAGTAGAGATGACAAGAGGAAAGATTATCTAGATGTCCTTTTGGAGTTTCGTGGTGATGGCGTGGAGGAGCCCTCTAGATTTTCTTCAACAACGATC AATGCGATTGTCTTAGAAATGTTTACGGCAGGGACTGATACAACAACAAGCACTTTGGAATGGGCCATGGCTGAACTTCTACGTAACCCTAAAGTAATGA AAACAGTCCAATCCGAGTTGAGAAGCACCATTGGCCTCAATAAGAAGCTCGAAGATAAAGACATTGAGAATCTCCCATACCTAAAGGCAGTCATCAGGGA AACACTGAGACTCCACCCTCCTCTACCTTTTTTAGTCCCGCACATGGCCATGAACCCTTGCAAGATGCTAGGCTATTACATCCCTAAAGAGACAACAATT CTAGTTAATGTGTGGGCCATTGGAAGGGATTCAAAGACTTGGGATGACCCTTTGGTTTTCAAGCCAGAAAGGTTCTTGGAACCAAACATGGTGGATTACA AAGGTCGTCATTTTGAGTTCATACCATTTGGTTCTGGCCGTAGAATGTGCCCTGCCATGCCGCTCGCTTCTCGTGTACTTCCTTTGGCTCTTGGATCGCT CTTGCTTTCATTTGATTGGATTTTGCCGGTTGGTCTCAAGCCAGAGGATATGGACATGACTGAAAAAATAGGGATAACACTTAGAAAAAGTGTTCCCTTA AAGGTCATACCGACACCTTACAAGGGGTCATCAAATCATTATGGGTTCTGA
AA sequence Show only first row Show all	>Potri.005G029200.2 pacid=42804395 polypeptide=Potri.005G029200.2.p locus=Potri.005G029200 ID=Potri.005G029200.2.v4.1 annot-version=v4.1 MDYEIAGLVLAVLLWVAWAVVTQRRYRRSEEQGQLPPGPRPLPVVGNIFLLGWAPHESFANLARVHGPIMTIWLGSMCNVVISSSEVAREMFKNHDAVLA GRKIYEAMRGDFGNEGSIITAQYGPHWRMLRRLCTTEFFVTSRLDAMQGARTRCIDGMLLYIEDGSANGTSAIDLGRYIFLMAFNLIGNLMFSKDLLDPK SEKGAKFFQHAGKVMELAGKPNMADFLPILRWLDPQGIRRKTQFHVARAFEIAGGFIKERTESTQKENSRDDKRKDYLDVLLEFRGDGVEEPSRFSSTTI NAIVLEMFTAGTDTTTSTLEWAMAELLRNPKVMKTVQSELRSTIGLNKKLEDKDIENLPYLKAVIRETLRLHPPLPFLVPHMAMNPCKMLGYYIPKETTI LVNVWAIGRDSKTWDDPLVFKPERFLEPNMVDYKGRHFEFIPFGSGRRMCPAMPLASRVLPLALGSLLLSFDWILPVGLKPEDMDMTEKIGITLRKSVPL KVIPTPYKGSSNHYGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G029200 [exp]	0	1
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G029700 [exp]	2.00	0.9798
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G029600 [exp]	2.44	0.9765
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G080500 [exp]	2.82	0.9744	CYP716B4
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.014G131800 [exp]	3.87	0.9756
AT1G52780			Protein of unknown function (D...		Potri.006G187000 [exp]	4.24	0.9650
AT3G12830			SAUR-like auxin-responsive pro...		Potri.002G057500 [exp]	5.47	0.9632	SAUR13
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Potri.001G175800 [exp]	5.47	0.9709
AT4G24350			Phosphorylase superfamily prot...		Potri.008G028500 [exp]	6.48	0.9612
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.016G074000 [exp]	7.74	0.9687
AT4G08250	GRAS		GRAS family transcription fact...		Potri.005G175300 [exp]	7.93	0.9682

Compare expression of checked genes

Potri.005G029200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.