Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09020 250 / 1e-81 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G028800 [exp] 301 / 1e-101 AT1G09020 683 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.013G020400 [exp] 286 / 8e-96 AT1G09020 715 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G029300 [exp] 251 / 2e-85 AT1G09020 287 / 3e-95 homolog of yeast sucrose nonfermenting 4 (.1) Potri.010G023500 [exp] 225 / 4e-72 AT1G09020 613 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.008G216800 [exp] 224 / 8e-72 AT1G09020 628 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015179 [exp] 267 / 1e-88 AT1G09020 735 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10031501 [exp] 266 / 9e-88 AT1G09020 701 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10029909 [exp] 265 / 9e-88 AT1G09020 749 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10004490 [exp] 265 / 1e-87 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037503 [exp] 218 / 1e-71 AT1G09020 433 / 9e-152 homolog of yeast sucrose nonfermenting 4 (.1) Lus10006516 [exp] 220 / 6e-70 AT1G09020 648 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Potri.005G029900.2 pacid=42803428 polypeptide=Potri.005G029902.1.p locus=Potri.005G029900 ID=Potri.005G029900.2.v4.1 annot-version=v4.1 ATGCAGGCAGGGCCATATGATTCGATGAAAGATATTTCTTTGAAAATTTTGCAAAGCAGCGTGTCAACAGTTCCCATTATTCATTCTGCTTCTCAGGATG GCTCATTTCCGCAGCTACTATATCTTGCTTCCCTGTCTGGAATACTAAAATGTATAAGCAGGTATTTCAGACATTCTGCTGGCTCCTTCCCCATTCTTCA ACAGCCAATTTGTAATTCACTCGTCAAAAGATTACCACAAGCTACAACTTTCCTCTTCTATCTTGATATCACTGCTTTGGCAAAAGATAAAGCCTATGCA CAAATTCATCTTGATGAAATAAGTATTCATCAGGCTCTGCAATTGGGTCAGAATGCAAATTCTTCAAATGCATTCTACAATGGACAGAGATGTCAGATGT GTTTGCGGACTGATTCTCTACACAAAGTGATGGAGCGTTTGGCAAATCCCGGGGTTAGGAGGCTTTTGATTGTGGAAGCTGGCAGCAAGCGTGTAGAAGG GGTTATCTCACTGAGTGATGTCTTCAGGTTCCTGCTGGGGATATAG
AA sequence Show only first row Show all	>Potri.005G029900.2 pacid=42803428 polypeptide=Potri.005G029902.1.p locus=Potri.005G029900 ID=Potri.005G029900.2.v4.1 annot-version=v4.1 MQAGPYDSMKDISLKILQSSVSTVPIIHSASQDGSFPQLLYLASLSGILKCISRYFRHSAGSFPILQQPICNSLVKRLPQATTFLFYLDITALAKDKAYA QIHLDEISIHQALQLGQNANSSNAFYNGQRCQMCLRTDSLHKVMERLANPGVRRLLIVEAGSKRVEGVISLSDVFRFLLGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.005G029900 [exp]	0	1
AT2G27260			Late embryogenesis abundant (L...		Potri.001G218300 [exp]	7.61	0.8588
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Potri.008G187600 [exp]	13.71	0.9017
AT2G23090			Uncharacterised protein family...		Potri.014G018400 [exp]	16.24	0.8614
					Potri.017G113750 [exp]	18.02	0.8901
AT3G29360		UGD2	UDP-glucose dehydrogenase 2, U...		Potri.008G094300 [exp]	19.44	0.8967
AT5G14550			Core-2/I-branching beta-1,6-N-...		Potri.001G348400 [exp]	28.49	0.8847
AT1G70730		PGM2	phosphoglucomutase 2, Phosphog...		Potri.010G109500 [exp]	32.86	0.8583	PGM1.1
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.005G029300 [exp]	33.04	0.8603	Pt-SNF4.2
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Potri.004G124500 [exp]	37.24	0.8654
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Potri.010G207200 [exp]	41.71	0.8858	UXS1.1

Compare expression of checked genes

Potri.005G029900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.