Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06540 602 / 0 AthREP Rab escort protein (.1) AT5G09550 117 / 4e-28 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) AT3G59920 102 / 5e-23 ATGDI2 RAB GDP dissociation inhibitor 2 (.1) AT2G44100 99 / 5e-22 AT-GDI1, ATGDI1 guanosine nucleotide diphosphate dissociation inhibitor 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G028900 [exp] 962 / 0 AT3G06540 605 / 0.0 Rab escort protein (.1) Potri.007G115300 [exp] 110 / 1e-25 AT5G09550 785 / 0.0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) Potri.007G146600 [exp] 102 / 6e-23 AT2G44100 777 / 0.0 guanosine nucleotide diphosphate dissociation inhibitor 1 (.1.2) Potri.017G001200 [exp] 100 / 2e-22 AT2G44100 776 / 0.0 guanosine nucleotide diphosphate dissociation inhibitor 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008341 [exp] 105 / 6e-24 AT3G59920 800 / 0.0 RAB GDP dissociation inhibitor 2 (.1) Lus10035634 [exp] 105 / 1e-23 AT5G09550 778 / 0.0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) Lus10010760 [exp] 104 / 1e-23 AT5G09550 778 / 0.0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) Lus10027094 [exp] 104 / 1e-23 AT3G59920 800 / 0.0 RAB GDP dissociation inhibitor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00996 [poplar] [flax] GDI GDP dissociation inhibitor
Representative CDS sequence Show only first row Show all	>Potri.005G030000.2 pacid=42803500 polypeptide=Potri.005G030000.2.p locus=Potri.005G030000 ID=Potri.005G030000.2.v4.1 annot-version=v4.1 ATGAGTGAGCCCCCACCATACCCGCAAATTGAACCAACTACCTTCGACCTGATTGCTGTGGGCACTGGTTTAGCAGAATGCATTGTTGCTGCTGCAGCTT CTGCTTCTGGAAAAACTGTCCTTCACCTTGACACTAACCCATTCTATGGGTCCCATTACTCCTCTCTCTCGGTCCCGGAACTCACATCTTTCCTTATTTC CAATTCTACAGCTTCCTCACCACCATCTTCCACATCAACCACAACTGACATCCCTGATTACTCGATTGTAAATCTCATCACTCAGCCAGTATATTCAGAT GTTGAGATTTCCTGTTTTTATCCTGAACTAATGGAAGAAAACTTACGGAAGTTCAATTTGGACTTATGCGGACCAAGGGTGTTATTTTGCGCCGACAAGT CAATTGATCTTATGTTAAAATCTGGAGCAAGTAATTATGTGGAGTTCAAGAGTATTGATGCCAGTTTTGTTGGTGATGGGAATGGAAAGTTATGGAATGT GCCAGATTCCAGAGCTGCCATATTTAAGGATAAGAGTTTGACTCTGATGGAAAAGAATCAGTTGATGAGGTTTTTCAAGCTGGTGCAAGGGCACTTGGTT GCCACAGTGGGGGCGGGTACTTCTGGTAATGATGGGAATGGGAATGGTAATGATGAAGAGGAAGGGAAGATGAAGATTTCAGATGAGGATTTGCAGAGGC CATTTGTTGAGTACTTGTCAAAAATGCGGTTGCCTCCAAAGATTAGATCGATTATTCTGTATGCTATTGCTATGGCAGATTATGATCAAGATGACATGGG GGTTTGCCAAAATTTGCTCAAGACTAAAGATGGAATAGATCGTTTGGCTCTATACCAGTCATCAGTTGGGAGGTTTACAAATGCTTCCGGGGCCCTAATT TATCCCATTTATGGTCAAGGGGAACTGCCACAAGCCTTTAGCCGCCGCTCTGCTGTCAAAGGTTGCATTCACGTTCTACGAATGCCAGTGACTGCGTTAC TTATGGAAAAGGATAGTGGGAGTTACAAAGGTGTTCGATTGGCTTCTGGCCAGGACATATTTAGCCAGAAGCTGGTTCTGGATCCATCCTTTACACTTGC CTCACCATCAGCCTCTCCATCAGATCTTCTGCATGAAAGTTTTAACTTTTTGAGCACCAGAGATGTTAAAGGGAAGGTGGCCAGAGGGATATGCATCACA CGAAATTCCTTGAAGCCAGATATGTCAAATCTTCTGGTTGTATACCCCCCTCGATCCCTGTACCCTGAGCAGATTACATCAATTCGAGCGCTCCAAATAA GTGGCAACTTGGCTGTTTGTCCTTTGGGCATGTTTGTGCTCTATCTTTCGGCTTTGTGTGATGATGCCATTCAAGGGAAGAGGTTACTAAATGCGGCTAT GAATGCCCTTCTGACTTTTCCTGATCCTGTAAATTCTGAAAGCAGTTCCACAGTTCAGAGTGAGACTACTGAAGAGAAACCCAGTGTCATTTGGAGCGGG TTGTATATGCAGGAGATGTCTACGGGTCAATTTGATTCTATCAACTTTGCTCCCATGCCCGATGGAAATCTGAATTACAACGATATATTAGATGCAGCTT TGAAGCTCTTTCAGGAGATGTATCCAAATGAAGAAAATTTCCCAGAGACAACTCCACCTGAGAATTCCGAGGATGATATTGGACTCACTCTAGAGACCTA G
AA sequence Show only first row Show all	>Potri.005G030000.2 pacid=42803500 polypeptide=Potri.005G030000.2.p locus=Potri.005G030000 ID=Potri.005G030000.2.v4.1 annot-version=v4.1 MSEPPPYPQIEPTTFDLIAVGTGLAECIVAAAASASGKTVLHLDTNPFYGSHYSSLSVPELTSFLISNSTASSPPSSTSTTTDIPDYSIVNLITQPVYSD VEISCFYPELMEENLRKFNLDLCGPRVLFCADKSIDLMLKSGASNYVEFKSIDASFVGDGNGKLWNVPDSRAAIFKDKSLTLMEKNQLMRFFKLVQGHLV ATVGAGTSGNDGNGNGNDEEEGKMKISDEDLQRPFVEYLSKMRLPPKIRSIILYAIAMADYDQDDMGVCQNLLKTKDGIDRLALYQSSVGRFTNASGALI YPIYGQGELPQAFSRRSAVKGCIHVLRMPVTALLMEKDSGSYKGVRLASGQDIFSQKLVLDPSFTLASPSASPSDLLHESFNFLSTRDVKGKVARGICIT RNSLKPDMSNLLVVYPPRSLYPEQITSIRALQISGNLAVCPLGMFVLYLSALCDDAIQGKRLLNAAMNALLTFPDPVNSESSSTVQSETTEEKPSVIWSG LYMQEMSTGQFDSINFAPMPDGNLNYNDILDAALKLFQEMYPNEENFPETTPPENSEDDIGLTLET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06540		AthREP	Rab escort protein (.1)		Potri.005G030000 [exp]	0	1
AT4G03020			transducin family protein / WD...		Potri.008G197200 [exp]	2.00	0.8619
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Potri.016G095100 [exp]	3.46	0.8437
AT4G16150	CAMTA		calmodulin binding;transcripti...		Potri.010G141700 [exp]	7.93	0.7592
AT1G76140			Prolyl oligopeptidase family p...		Potri.002G013900 [exp]	8.48	0.7752
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.008G179500 [exp]	9.00	0.8132
AT3G52260			Pseudouridine synthase family ...		Potri.008G042000 [exp]	9.48	0.7637
AT4G38010			Pentatricopeptide repeat (PPR-...		Potri.015G138000 [exp]	10.48	0.8025
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.013G029800 [exp]	10.58	0.7988	DHQD2
AT5G22770		ALPHA-ADR	alpha-adaptin (.1.2.3)		Potri.004G189700 [exp]	10.67	0.7387
AT5G15270			RNA-binding KH domain-containi...		Potri.004G123400 [exp]	10.77	0.8042

Compare expression of checked genes

Potri.005G030000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.