Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69550 92 / 2e-20 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G44510 74 / 2e-14 TAO1 target of AVRB operation1 (.1) AT4G12010 67 / 6e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G25510 67 / 8e-12 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 66 / 1e-11 transmembrane receptors;ATP binding (.1.2) AT2G14080 65 / 2e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 65 / 3e-11 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G11250 61 / 6e-10 Disease resistance protein (TIR-NBS-LRR class) (.1) AT4G12020 59 / 2e-09 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) AT3G44670 58 / 4e-09 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G031899 [exp] 208 / 3e-60 AT1G69550 469 / 6e-141 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G030700 [exp] 205 / 3e-59 AT1G69550 602 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G030318 [exp] 171 / 3e-47 AT1G69550 673 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G031101 [exp] 163 / 1e-44 AT5G17680 557 / 8e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.004G088500 [exp] 149 / 9e-40 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.019G070001 [exp] 75 / 2e-14 AT5G17680 481 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070565 [exp] 72 / 2e-13 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.015G043600 [exp] 71 / 2e-13 AT1G27170 1195 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.019G069500 [exp] 68 / 3e-12 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018616 [exp] 87 / 1e-18 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 87 / 1e-18 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10030839 [exp] 75 / 1e-14 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10003749 [exp] 63 / 1e-10 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10026201 [exp] 57 / 1e-08 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005171 [exp] 55 / 4e-08 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10041060 [exp] 55 / 6e-08 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041078 [exp] 54 / 1e-07 AT5G17680 399 / 6e-126 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 54 / 1e-07 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 52 / 4e-07 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G030365.1 pacid=42802996 polypeptide=Potri.005G030365.1.p locus=Potri.005G030365 ID=Potri.005G030365.1.v4.1 annot-version=v4.1 ATGGCATCACGCGTTGAAGACATCGAATCATTACTATCCCTTGGATCAACAACGGCTGAAGCTGTGTATCATCGAAACTGTAGTAAATTTGAAGGCCAAA GCTTTTTCCAAAATGTTAGGGAAGAATCACAGAAGCATGGAATAGATCATGTAAGACAGAAAATTCTTGGTGAAGTATTAGAGAAGAAAGATATGACTAT ACGCACAAAAGTGTTACCCCCGGCCATTAAGCGAATGCTTCAAAGAAAAAAAGTTCTCATAGTTCTTGATGATGTCAATGATCCACAAGATTTAAAATAT TTACTAGGAGAGGATGAGCTTAATCTTTATTCTTGCTCAAAACTAGCAAGTCTTCCAAATAGCATTTGCAAGTTGAAATGTCTTGCTAAGCTTAATCTTG GTCGTTATCCAAAACTAGCAAGTCTACCGGACAGCATTGAAGAGTTGAGATCTCTTGCAGAGCTTGGTATTTCTTCTTGCTCAAAACTAGCAAGTCTATT GGACAGCATTGACGAGTTGAGATCTCTTGAAAAGCTTAGTCTTTCTTCTTGCTCAAAACTAGCAAGTTTACCGGACAGCATTGGTGAGTTAAGATCTCTT GCAAAGCTTAGTCTTTCTTCTTGCTCAGGACTAGCAAGTCTACAGGACAGCATTGGCGGGTTGAGATCTTTTACTATGCTTTATCTTAATGGTTGCTATG GACTAACAAGTCTACCGGACAATATTGGCGCGTTGAAATCTCTTCAATGGCTTTATCTTGATGGTTGCTCGGGACTAATAAATCTACCAAACAGCATTGG CGGGTTGAAATCTCTCAAATCGCTTTTATCAAGACTAACAAGTCTACCAGACAGCATTGACGAGTTGAAATCTCTCAAATCGCTTAATCTTAGTGGTCGC TCAGGACTAGCAAGTCTACCAGACAACATTGGCGCATTGAAATCCCTAAAATACTTGATCTTAATGGTTGCTCAGGACTAG
AA sequence Show only first row Show all	>Potri.005G030365.1 pacid=42802996 polypeptide=Potri.005G030365.1.p locus=Potri.005G030365 ID=Potri.005G030365.1.v4.1 annot-version=v4.1 MASRVEDIESLLSLGSTTAEAVYHRNCSKFEGQSFFQNVREESQKHGIDHVRQKILGEVLEKKDMTIRTKVLPPAIKRMLQRKKVLIVLDDVNDPQDLKY LLGEDELNLYSCSKLASLPNSICKLKCLAKLNLGRYPKLASLPDSIEELRSLAELGISSCSKLASLLDSIDELRSLEKLSLSSCSKLASLPDSIGELRSL AKLSLSSCSGLASLQDSIGGLRSFTMLYLNGCYGLTSLPDNIGALKSLQWLYLDGCSGLINLPNSIGGLKSLKSLLSRLTSLPDSIDELKSLKSLNLSGR SGLASLPDNIGALKSLKYLILMVAQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69550			disease resistance protein (TI...		Potri.005G030365 [exp]	0	1
AT5G27550			P-loop containing nucleoside t...		Potri.005G030271 [exp]	1.41	0.9739
AT4G31980			unknown protein		Potri.003G207900 [exp]	2.44	0.9534
AT5G15930		PAM1	plant adhesion molecule 1 (.1)		Potri.017G109000 [exp]	2.64	0.9532	PAM1.3
AT4G12010			Disease resistance protein (TI...		Potri.019G069866 [exp]	4.89	0.9517
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072100 [exp]	8.94	0.9526
AT5G35390			Leucine-rich repeat protein ki...		Potri.006G078600 [exp]	22.62	0.9530
AT5G19090			Heavy metal transport/detoxifi...		Potri.014G140600 [exp]	30.00	0.9461
					Potri.006G230650 [exp]	31.19	0.9187
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G117050 [exp]	31.81	0.9419
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004400 [exp]	34.46	0.9527

Compare expression of checked genes

Potri.005G030365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.