Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24130 121 / 4e-31 Leucine-rich receptor-like protein kinase family protein (.1) AT5G20480 112 / 9e-28 EFR EF-TU receptor (.1) AT5G46330 110 / 3e-27 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G47580 110 / 4e-27 Leucine-rich repeat protein kinase family protein (.1) AT3G56370 107 / 3e-26 Leucine-rich repeat protein kinase family protein (.1) AT4G20270 103 / 6e-25 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT3G47570 102 / 2e-24 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 100 / 1e-23 Leucine-rich repeat protein kinase family protein (.1) AT5G01890 99 / 3e-23 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 98 / 5e-23 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G031700 [exp] 395 / 2e-133 AT5G20480 368 / 3e-113 EF-TU receptor (.1) Potri.005G030800 [exp] 391 / 1e-129 AT3G47570 576 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G031300 [exp] 380 / 3e-125 AT3G47570 574 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G020900 [exp] 319 / 6e-102 AT3G47570 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 144 / 5e-39 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 137 / 2e-36 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 137 / 2e-36 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 132 / 8e-35 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 131 / 2e-34 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032306 [exp] 143 / 2e-38 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 140 / 1e-37 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 137 / 3e-36 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 137 / 3e-36 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010199 [exp] 131 / 2e-34 AT3G47570 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 129 / 8e-34 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 129 / 1e-33 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037311 [exp] 128 / 2e-33 AT3G47570 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 128 / 2e-33 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010772 [exp] 127 / 3e-33 AT2G24130 928 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Potri.005G030626.2 pacid=42802992 polypeptide=Potri.005G030626.2.p locus=Potri.005G030626 ID=Potri.005G030626.2.v4.1 annot-version=v4.1 ATGGATGCATGGTTTCGCTTTTTGACACTGCTGGATTTATCTTTTAACAGCTTGCAGGGGCCTCTTCCACCAGAAATTGGAGTTTTTTCTAACTTGGGGC TCTCCCTCAACCTTTCAAATAACAATCTAGACGGGGAAATACCTGCAACTATTGGAAATCTGGTATCTGTACAAGCTATTGACTTATCGGTGAACAGATT TTCTGGCATTATACCAAGTTCAGTTGGAAGTTGTACGGCTTTGGAGTACTTGAACCTATCCAAGAACATGATTGAAGGTACAATTCCAGAGTCATTGAAA CAAATTGCATATTTAAAAGTACTGGATGTGGCTTTTAATCAATTAACAGGCAGCGTTCCAATCTGGCTTGCCAATGACTCAGTGATGAAGAATTTCGACC TGTCCTATAATAGATTAACTGGAGAAGTTTCAAGTATGGGAAAGTTTAAAAATCTTAGTGGAAGCACATTGATAGGAAATGCAGGCTTGTGTGGTGGTTC TGCGCTAATGAGACTCCAGCCATGTGCAGTTCAAAAGAAGAGGAAGTTAAGGAAATGGACCTATTACTTGTTGGCAATTACTATTAGCTGCTTTTTACTG CTCTTGGTATATGTCGGGGTCCGTCTTAGAAAATTCTTTAAAAGGAAAAGTGATGCAGAATCTGAAGAGGCAATTCTGATGGCTTTCAGAGGACGAAATT TCACTCTTAGCGAGCTCAAAATTGCAACGGACGGGTTCAGTGATGCCAATCTCTTAGCGAGCTCAAAATTGCTTTGGATCTGTTTATAA
AA sequence Show only first row Show all	>Potri.005G030626.2 pacid=42802992 polypeptide=Potri.005G030626.2.p locus=Potri.005G030626 ID=Potri.005G030626.2.v4.1 annot-version=v4.1 MDAWFRFLTLLDLSFNSLQGPLPPEIGVFSNLGLSLNLSNNNLDGEIPATIGNLVSVQAIDLSVNRFSGIIPSSVGSCTALEYLNLSKNMIEGTIPESLK QIAYLKVLDVAFNQLTGSVPIWLANDSVMKNFDLSYNRLTGEVSSMGKFKNLSGSTLIGNAGLCGGSALMRLQPCAVQKKRKLRKWTYYLLAITISCFLL LLVYVGVRLRKFFKRKSDAESEEAILMAFRGRNFTLSELKIATDGFSDANLLASSKLLWICL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24130			Leucine-rich receptor-like pro...		Potri.005G030626 [exp]	0	1
AT1G50460		ATHKL1, HKL1	hexokinase-like 1 (.1)		Potri.001G254800 [exp]	5.47	0.8775
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003200 [exp]	5.65	0.8659
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G079800 [exp]	6.16	0.8981	ERF6
AT4G27220			NB-ARC domain-containing disea...		Potri.018G135600 [exp]	8.48	0.8639
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Potri.015G094900 [exp]	9.89	0.7921
					Potri.001G198800 [exp]	10.24	0.8444
AT4G27220			NB-ARC domain-containing disea...		Potri.018G136301 [exp]	12.00	0.8488
AT4G27220			NB-ARC domain-containing disea...		Potri.018G136500 [exp]	12.64	0.8450
AT5G36930			Disease resistance protein (TI...		Potri.006G270000 [exp]	13.49	0.8627
AT3G12630		SAP5	stress associated protein 5, A...		Potri.009G063900 [exp]	14.00	0.8596

Compare expression of checked genes

Potri.005G030626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.