Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69550 603 / 0 disease resistance protein (TIR-NBS-LRR class) (.1) AT4G12010 475 / 2e-143 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 457 / 4e-136 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G44510 437 / 5e-130 TAO1 target of AVRB operation1 (.1) AT2G14080 431 / 7e-128 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 412 / 2e-121 Disease resistance protein (TIR-NBS-LRR class) (.1) AT3G25510 416 / 6e-119 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G16890 405 / 4e-118 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G65850 389 / 2e-114 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G41550 381 / 4e-111 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G031899 [exp] 1988 / 0 AT1G69550 469 / 6e-141 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G030318 [exp] 1489 / 0 AT1G69550 673 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.004G088500 [exp] 1399 / 0 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G031101 [exp] 1215 / 0 AT5G17680 557 / 8e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 570 / 1e-175 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 558 / 3e-171 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 558 / 3e-170 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 545 / 2e-168 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 545 / 3e-163 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018616 [exp] 470 / 2e-140 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029722 [exp] 464 / 2e-140 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10039850 [exp] 449 / 6e-134 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10030839 [exp] 444 / 3e-132 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10041060 [exp] 444 / 8e-132 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 428 / 7e-126 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029628 [exp] 421 / 3e-122 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 411 / 6e-121 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 400 / 3e-118 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10001375 [exp] 406 / 3e-117 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G030700.2 pacid=42804625 polypeptide=Potri.005G030700.2.p locus=Potri.005G030700 ID=Potri.005G030700.2.v4.1 annot-version=v4.1 ATGGCTTCCTCTTCTTCTCCCACTACTCCATATTTGAAGCACGAAGTGTTCCTCAGTTTTAGAGGCTTTGACACCCGCAATAGTTTCACCAGTCATCTTT ATGATGCTTTGCAGCGAAACCAAATTGATGCTTACATCGATAATAAACTTGATGGAGGAGAAAAGATCGAGCCTGCCCTCTTGAAAAGGATTGAAGAGTC GTTTATTTCGCTAGTCATTTTCTCTGAAAATTATGCAGATTCTACTTTCTGTTTGAGGGAACTCTCCAAGATTCTTGAGTGCATGGAGACCAAACAACAG ATGGTCTTACCAGTATTTTACCGACTTGATCCAAGCCATGTTCAAAATCTGACTGGGAGCTATGGAGATGCACTTTGCAAGCATGAAAAAGATTGCAGTT CTGAAGAAGTAAAGAGTTGGAGACGTGCTTTGAAAGAAATAGCTAATCTCAAGGGCTGGGATTCAAACGTCATTAAGGATGAGACCAAGCTAATTCAGGA AATTGTTTCCGACATTCAAAAGAAATTTAGCCATGAGCTGTCACTCTCATTCGATGCAGAAGGCCTTGTTGGAATGAAATCACGCGTTAAAGACATCGAA TCATTACTATCCTTTGGATCAACTGGTGTGCTCATTGTGGGAATCTGGGGGATAGGTGGTATAGGCAAGTCAACGACGGCTGATGTTGTGTATCATCGAA ACCGTAGTAAATTTGAAGGCCATTGCTTTTTCCAAAATGTGAGGGAAGAATCAAAGAGGCATGGAGTGAATCATGTAAGACAGGAAATTCTTGGTGAAGT ATTAGAGAAAAAAGATATGACTATACGCCCAATAGGGTTACCCCCGGACATTAAGCGAATGCTTCAAAGGAAAAAAGTCCTCATAGTTCTTGATGATGTC AATGATCCACAAGATTTAAAATATTTACTAGGAGAGGATGGTTTGTTTGGCCAAGGAAGTAGAATCATGGTGACAAGTAGAGATAGGCGAGTTCTTGAAA ATGCATGTGATGAAGACAAAATTTACGAGGTTGAAATTTTAGATGAAGACGATGCACTACGACTCTTCAGCTTACATGCTTTTAAACAAGATCGTCCCAT GGAAGGATATACTGGGCTATCAAAAACTGTGGTAAGCTGTGTTAAGGGCATTCCATTAGTTCTCAAGGTTTTAGGTGCCAATCTATACAATAAAAGGAGT GTTGAATACTGGGAAAGTAAGGTGGCACAGCTAAGAACAAATGGTAGCGAGGACATTAAGAAACATTTGGAAATGTGTTATCATGAATTAAATCAGACAG AAAAGAAAATATTTCTTGATATAGCATGTTTCTTTGAACTGTGCGAAAGGGATATCCTCCAACAAACACTAGATCTGAAAGAAAGAAGTGGGATCGATCG TCTCGCTGATATGTGTCTCATAAAAATTGTTCACGGCAAGATCTGGATGCATGATGTGCTACTACTTCTAGGGCGAGAAATTGTCCTCCGAGAAAATGAT GACCCTAGAGAACGTAGCAGGTTGTGGGAGGATGAGGATGTCTGTCGTGTATTAACAACTCAGGGGACTAGATCAAAAGTGGAAAGCATATCCCTCATCT TGGATGCAACTAAAGATCAATTGAGATTAAGTCCTACAGCATTTGAAGGGATGTATAATTTAAGATTGCTCAAAATCTACTACCCACCTTTCTTAAAGAA TCCCTCAAAGGAGCAAATTATGAATCGAAAGAGGGTCGGAATCCACCTTCCAGGAGGGCTTCACTTTCTTTCAAGTGAGCTAAGGTTTCTCTACTGGTAT AATTACCCTTTGAAATCCTTGCCATCAAATTTTTTCCCTGAGAAACCTTTTCAACTTGAAATGCCCTGTAGCCAGCTTGAACAACTTTGGAATGAAGGCC AGCCACTTGAGAATTTAAAATTAATGAACCCCCCTTCCTCAAAGCTGAGCTTAATTGATTCAGACCTGTCTAAAATCCCAAACCTTGAGGTTCTACATCC GGGACATTATAGTAGCTTGGCTGGTATACCTTCCTCGATTAAATACAGCACCAGTCTTGCCACATTAGAGCTTCCTAGATTCGAGAGTTTCTGTACTTTG CCATCATCAATTGGGTGCCTCTCTCAACTTGTTAGATTAAACTTATCTTTATGTGAAAGTCTTGCTAGTCTACCGGACAACATTGATGAGTTGAAATCTC TTGTAGAACTTGATCTTTATTCTTGCTCAAAACTAGCAAGTCTTCCAAATAGCATTTGCAAGTTGAAATGTCTTACTAAGCTTAATCTTGGTCATCAGCC AAAACTAGTAAGTCTACCAGACAACATTGGGGAGTTGAGATCTCTTGTAAAGCTTAGTCTTTTTTCTTGCTCAAAACTAGTTAGTCTACCCGACAGCATT GGCGAGTTAAGATCTCTTGTAGAGCTTAGTCTTTCTTCTTGCTCAAAACTAGCAAGTCTCCCAGATAGCATTGGCCAGTTGAAATCTCTTGTAGAGCTTC GTCTTTCTTCTTGCTCAAAACTAGCAAGTCTCCCAGACAGCATTGGTGAGTTGAGATCTCTTGTAGAGCTTCGTCTTTCTTCTTGCTCGGGACTAGCAAG TCTACCAGACAGCATTGGCGGATTGAAATCTCTTCAATGGTTTGATCTTAATGGTTGCTTTGGACTAGCAAGTCTACCGGACAACATTGGTGCGTTGAAA TCTCTTCAATGGCTTTATCTTAATGGATGCTCAGGATTAGCAAGTCTACCAAACAACATTGGCGGGTTGGAATCTCTCAAATCGCTTTTATCAAGACTAA CAAGTCTACCGGACAACATTAACGAGTTGAAATCTCTCAAATTGTTTTATCATAGTGGTCGCTCAGGACTAGCAAGTCTAACGGACACCATTGACGGGTT GAAATCTCTCAAATTGCTTGATCTTAGTGGCCGCTCAGGACTAACAAGTCTACCAGACAATATTGGTGCGTTGAAATCTCTTGAAAACCTTGATCTTAGT GGTTGCTCAGGACTAGCAAGTCTACCAGACAACATTGGCTCATTGAAATCTCTCAAATCGCTTAATCTTAATGGTTGGTCAGCACTAACAAGTCTATCAG ACAAGATTGGGGCGTTGAAATCTCTTAACAACATTGATCTTAGTGGTTGCTCAGGACTAGCAAGTCTACCAGACAGTATTGGCGTATTGAAATCTCTTAA CAACATTAATCTTAGTGGTTGCTCAGGACTAGCAAATCTACCGGATAGCATTGGTGCGTTGAAATCCCTCAAATCGCTTCATCTTTGTGGTTGCTCAAGA CTAGCAAGTTTACCGGACAGAATTGGCAGGTTGAAATCTCTTACGTGGCTTAATCTTTCTGGTTGCTCAGGACTAAAAAGTCTACCGGACAGCATTGGCG AGTTGAAATCTCTTGAACGACTTGATCTTTATGATTGCTCCGGACTAGCAAGTCTACCGAACAACATTGGCGCGTTAAAATCTCTAAAATCGCTTAATCT TAGTGGTTGCTCAGGACTAACAAGTCTACGGGACAACATTGGCGCGTTGAAATCTCTTGAATCTCTTATACTTAGTGGTTGCTCAAGACTAGCAAGTCTA CCAGACAACATTGGCGAGTTGAAATATCTCAAATCGCTTCATCTTAGTGGTTTCTCAAGACTAGCAAGTCTACCGGACAACATTAGAGAGTTGAAATCTC TTGAATCGCTTAGTCTTTATGGTTGTTCAGGATTAGCAAGTCTACCGGACAACATTGGCGTGTTGAAATCTCTCAAATCGCTTCGTCTTAGTGGTTTCTC AAGACTAGCAAGTCTACCGAACAGCATTGTCGAGTTGAAATCTCTTGAATCACTTAGTCTTTGTGGTTGCTCAGGACTAGCAAGTTTACCAGACATAATT GGCGGGTTGAAATCTCTCAAATCGCTTTGTCTTAGTGGTTTCTCAAGACTAGCAAGTTTACCGGACAGCATTGGCGCGTTGAAATCTCTTGAATCACTTA GTCTTTGTGGTTGTTCAGGACTAGCAAGTTTATCGGACATAATTGGCGGGTTGAAATCTCTTACGTGGCTTAATCTTTCTGATTGCTCAGGACTAAAAAG CCTACCCGACAACATTGTGGAGTTGAAACATCTTACTACGCTCATTCTCAGTGGTTGCTTAAAACTAGCGAGTCTTCCAGACAACTTCATTGATCTTGAA TTTAGTGGACTTGACAAACAACGTTGTTATATGCTGAGAGGATTCCAGAAAGTAGAAGAAATTGCCGCATCCACCTATCAATTGGGCTGCCATGAACTTT TAAATTTGGAAAATTCTCGTGTGTTAAAAGCTCCAGAGAGCTTAGGCTCTTTGTTGTCGCTAACACGATTGAGATTATCTAAGATTGATTTTGAGAGGAT ACCTGCAAGCATCAAGCACCTTACTAAGCTAAGTGAACTCTATTTAGATGACTGCAAGCGGCTTCAATGTTTACCAGAGCTTCCATCGACTCTACAAGTT TTAATCGCATCAGGTTGCATCTCTCTAAAATCTATAGCAAGTATGTTCATGCAAGGTGATAGAGAATATAAAGCTGCTTCTCAGGAATTCAATTTCTCTG GATGCCTCCAACTGGATCAGAATCAACGCACTAGAATTATGGGTGATGCCCGTTTACGAATTCAACGCACGGCAACATCATTGTTTTATCAGGAATATCA TGGTCAGTTCATTAGAGTTCGGTTGTGTATTCCTGGGTCGGAAGTCCCGGAGGGTTTCAGTTATAAAAATAGAGAAGGATCTTCAGTAAAAATCCGGCAA CCAGCTCATTCTTATCGTGGTTTCACTTTTTGCGCTGTTGTTTCATTTGGCCAAAACGGGGAAAGGCGTCCGGTTAATATTGAATGTGAATGCCATTTGA TAATCAAAGATGGAACCCAGATTGATCTCAGTTCCTACTACTACGATAAATATGAAAGACAGGTGAGGAGTTTATGGAAAAGGGATCAGCATGTGTTCAT TTGGAGTGTCCACTCTAAGGGCTTTTTCAAGGAGGCCTCGTTTCATTTCAAACCACTGTGGGGAGCTACTGATGTGATGGTTGCGTGTGGAGTCCATCCA CTGTTTGTCAACGAGTTTTAA
AA sequence Show only first row Show all	>Potri.005G030700.2 pacid=42804625 polypeptide=Potri.005G030700.2.p locus=Potri.005G030700 ID=Potri.005G030700.2.v4.1 annot-version=v4.1 MASSSSPTTPYLKHEVFLSFRGFDTRNSFTSHLYDALQRNQIDAYIDNKLDGGEKIEPALLKRIEESFISLVIFSENYADSTFCLRELSKILECMETKQQ MVLPVFYRLDPSHVQNLTGSYGDALCKHEKDCSSEEVKSWRRALKEIANLKGWDSNVIKDETKLIQEIVSDIQKKFSHELSLSFDAEGLVGMKSRVKDIE SLLSFGSTGVLIVGIWGIGGIGKSTTADVVYHRNRSKFEGHCFFQNVREESKRHGVNHVRQEILGEVLEKKDMTIRPIGLPPDIKRMLQRKKVLIVLDDV NDPQDLKYLLGEDGLFGQGSRIMVTSRDRRVLENACDEDKIYEVEILDEDDALRLFSLHAFKQDRPMEGYTGLSKTVVSCVKGIPLVLKVLGANLYNKRS VEYWESKVAQLRTNGSEDIKKHLEMCYHELNQTEKKIFLDIACFFELCERDILQQTLDLKERSGIDRLADMCLIKIVHGKIWMHDVLLLLGREIVLREND DPRERSRLWEDEDVCRVLTTQGTRSKVESISLILDATKDQLRLSPTAFEGMYNLRLLKIYYPPFLKNPSKEQIMNRKRVGIHLPGGLHFLSSELRFLYWY NYPLKSLPSNFFPEKPFQLEMPCSQLEQLWNEGQPLENLKLMNPPSSKLSLIDSDLSKIPNLEVLHPGHYSSLAGIPSSIKYSTSLATLELPRFESFCTL PSSIGCLSQLVRLNLSLCESLASLPDNIDELKSLVELDLYSCSKLASLPNSICKLKCLTKLNLGHQPKLVSLPDNIGELRSLVKLSLFSCSKLVSLPDSI GELRSLVELSLSSCSKLASLPDSIGQLKSLVELRLSSCSKLASLPDSIGELRSLVELRLSSCSGLASLPDSIGGLKSLQWFDLNGCFGLASLPDNIGALK SLQWLYLNGCSGLASLPNNIGGLESLKSLLSRLTSLPDNINELKSLKLFYHSGRSGLASLTDTIDGLKSLKLLDLSGRSGLTSLPDNIGALKSLENLDLS GCSGLASLPDNIGSLKSLKSLNLNGWSALTSLSDKIGALKSLNNIDLSGCSGLASLPDSIGVLKSLNNINLSGCSGLANLPDSIGALKSLKSLHLCGCSR LASLPDRIGRLKSLTWLNLSGCSGLKSLPDSIGELKSLERLDLYDCSGLASLPNNIGALKSLKSLNLSGCSGLTSLRDNIGALKSLESLILSGCSRLASL PDNIGELKYLKSLHLSGFSRLASLPDNIRELKSLESLSLYGCSGLASLPDNIGVLKSLKSLRLSGFSRLASLPNSIVELKSLESLSLCGCSGLASLPDII GGLKSLKSLCLSGFSRLASLPDSIGALKSLESLSLCGCSGLASLSDIIGGLKSLTWLNLSDCSGLKSLPDNIVELKHLTTLILSGCLKLASLPDNFIDLE FSGLDKQRCYMLRGFQKVEEIAASTYQLGCHELLNLENSRVLKAPESLGSLLSLTRLRLSKIDFERIPASIKHLTKLSELYLDDCKRLQCLPELPSTLQV LIASGCISLKSIASMFMQGDREYKAASQEFNFSGCLQLDQNQRTRIMGDARLRIQRTATSLFYQEYHGQFIRVRLCIPGSEVPEGFSYKNREGSSVKIRQ PAHSYRGFTFCAVVSFGQNGERRPVNIECECHLIIKDGTQIDLSSYYYDKYERQVRSLWKRDQHVFIWSVHSKGFFKEASFHFKPLWGATDVMVACGVHP LFVNEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69550			disease resistance protein (TI...		Potri.005G030700 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Potri.005G031101 [exp]	1.00	0.9842
AT1G69550			disease resistance protein (TI...		Potri.005G030318 [exp]	2.44	0.9605
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.005G030413 [exp]	3.00	0.9513
					Potri.017G003689 [exp]	3.46	0.8994
AT1G69550			disease resistance protein (TI...		Potri.005G031899 [exp]	4.00	0.9421
AT5G66900			Disease resistance protein (CC...		Potri.007G039100 [exp]	5.00	0.9129
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.001G007501 [exp]	5.91	0.8904
AT5G36930			Disease resistance protein (TI...		Potri.006G270000 [exp]	6.00	0.8853
AT4G18450	AP2_ERF		Integrase-type DNA-binding sup...		Potri.011G061800 [exp]	6.08	0.8281
AT5G27550			P-loop containing nucleoside t...		Potri.005G031500 [exp]	6.32	0.8893

Compare expression of checked genes

Potri.005G030700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.