Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RGA.58
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 575 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 557 / 0 EFR EF-TU receptor (.1) AT3G47090 555 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 548 / 6e-179 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 548 / 6e-179 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 490 / 4e-155 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G24130 474 / 6e-151 Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 443 / 1e-137 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G44700 439 / 3e-135 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G63930 435 / 4e-135 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G031300 [exp] 1858 / 0 AT3G47570 574 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G020900 [exp] 1599 / 0 AT3G47570 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G031700 [exp] 1335 / 0 AT5G20480 368 / 3e-113 EF-TU receptor (.1) Potri.017G145200 [exp] 611 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G020000 [exp] 610 / 0 AT3G47570 816 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 608 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 608 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 604 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 600 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033330 [exp] 610 / 0 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 608 / 0 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004827 [exp] 594 / 0 AT3G47570 812 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 582 / 0 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 579 / 0 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 579 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 566 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031043 [exp] 565 / 0 AT3G47570 756 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 565 / 0 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 561 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G030800.1 pacid=42802974 polypeptide=Potri.005G030800.1.p locus=Potri.005G030800 ID=Potri.005G030800.1.v4.1 annot-version=v4.1 ATGGCACACAATCAAAACTGCAACATGGCTGTGCCAGTGTTCTGTCTCATCTTTTTTCTCATGCCAGGAGCATCGGCATTTGTTTGCAATTTTACTGATT GTGAAGCTCTTCTCAAATTCAAGGCAGGCATAACAAGTGATCCGGAAGGATACGTCAAGGATTGGAATGAAGCCAATCCTTTCTGTAACTGGACCGGAGT TACATGCCACCAATCTCTCCAAAACCGCGTTATAGATCTTGAGATTACAGACATGCGCTTAGAAGGAAGTATATCGCCATTTCTATCCAATCTTTCTCTT CTCACCAAGCTTTCCTTGCAGGGTAATAATTTCCATGGAGAAATCCCAACTACCTTGGGAGCACTCTCACAGTTAGAATATCTCAATATGAGTGAAAATA AGCTCTCTGGTGCCTTGCCAGCTTCACTACACGGCTGTCAAATCTTGAAATTTCTAGACTTGACTGATAACAACCTTTCTGGGGTCATTCCTGAAGAACT AGGATGGATGAAGAAGCTGAGTTTTTTAGCTCTCTCTGAAAACAACCTCACTGGGGTCATTCCGGCCTTTTTGTCAAACCTGACAGAATTGACACAACTA GAACTGGCTGTGAACTACTTTACTGGGCAAATCCCTGTGGAGCTTGGAGTTTTGAGCAGGCTTGAGATTTTGTATTTGCACCTGAACTTTCTTGAGGGAA CAATACCTGCATCACTAAGTAATTGCACTGCATTGCAAGCAATTTCATTGATTGAGAATCGATTATCCGGGGAAATCCCTTCACAAATGGGGAACAAGCT CCAAAACTTGCGGAAGTTGTATTTTATGAACAACAATATTTCTGGTAGGATTCCGGTGACATTCTCAAATCTTTCACAGATAACTCTGCTTGATTTGAGT GTCAATTACTTGGAGGGTGAAGTTCCCGAGGAACTGGGGAAGTTGAAGAACCTTGAGATCCTTTACCTCCATAGCAACAACCTGGTTAGCAATTCTTCTC TTAGTTTTCTTACTGCTCTCACAAACTGTTCATTTCTGATGAAACTGCACTTGGGCTCATGTTTATTTTCTGGGAGTTTACCTGCTTCCATTGGAAATCT TTCCAAAGACCTCTACTATTTCAATCTTTTGAATAACCGTATAAGAGGAGAGATTCCAGATAGTATTGGAAACTTGAGTGGCCTCGTGACCCTACAACTG TGGTACAATCATTTGGACGGGACAATTCCAGCAACTTTTGGAAAGCTGAAGCTGTTGCAAAGACTATATTTGGGGAGAAACAAGCTACAAGGTTCCATTC CAGATGAAATGGGGCAGACGGAAAACCTTGGCTTACTTGATCTTGCCAATAATTCCATAACCGGGTCAATCCCTTGTTCACTTGGTAACCTCTCACAGTT GAGATACCTTTACCTATCTCAGAACAGCTTATCAGGAAATATTCCCATCAAACTCAGCCAGTGCTCTCTCATGATGCAGCTGGATTTATCTTTTAACAGC TTGCAGGGGCCTCTTCCACCAGAAATTGGAGTTTTTTCTAACTTGGGGCTCTCCCTCAACCTTTCAAATAACAATCTAGACGGGGAAATACCTGCAACTA TTGGAAATCTGGTATCTGTACAAGCTATTGACTTATCGGTGAACAGATTTTCTGGCATTATACCAAGTTCAGTTGGAAGTTGTACGGCTTTGGAGTACTT GAACCTATCCAAGAACATGATTCAAGGTACAATTCTAGAGTCATTGAAACAAATTGCATCCTTAAAAGCACTGGATCTGGCTTTTAATCAATTAACAGGC AGCGTTCCAATCTGGCTTGCCAATGACTCAGTGATGAAGAATTTCAACCTGTCGTATAATAGATTAACTGGAGAAGTTTCGAGTATGGGAAGGTTTAAAA ATCTTAGTGGAAGCACATTGATAGGAAATGCAGGCCTGTGTGGTGGTTCTGCGCTAATGAGACTCCAGCCATGTGCAGTTCATAAGAAAAGGAGGAAGTT ATGGAAATGGACCTATTACTTGTTGGCAATTACTGTTAGCTGCTTTTTACTGCTCTTGGTATATGTGGGGGTCCGTGTTAGACGATTCTTTAAAAAGAAA ACTGATGCAAAATCTGAAGAAGCAATTCTGATGGCTTTCAGAGGACGAAATTTCACTCAAAGAGAGCTCGAAATTGCAACCGACGGGTTCAGTGATGCCA ATCTCTTGGGGAGAGGAAGCTTTGGATCTGTTTATAAAGCTTGGATTGATGATAGAATATCTTTTGTCGCGGTTAAGGTTCTAAATGAAGACAGCAGGCG GTGTTACAAAAGCCTAAAAAGGGAGTGCCAAATACTGTCAGGAATTAAGCATCGGAATCTGGTTCAAATGATGGGATCAATCTGGAATTCACAGTTCAAG GCTCTCATCCTTGAGTTTGTAGGTAATGGAAACTTGGAACAGCATCTTTATCCTGAGTCCGAGGGAGGAAACTGTCGATTGACGTTGAGTGAGAGATTAG GAATAGCAATAGATATTGCGAATGCCTTGGAGTATCTTCAATTGGGTTGCTCAACTCAAGTTGTGCACTGTGATCTGAAACCACAAAATGTTCTTCTTGA TGATGATATGGTGGCCCATGTTGCGGACTTTGGAATTGGAAAGGTCTTTTTTGCTGATAAACCAACTGAATATTCTTCTACAGCAAGTGGCCTGCGAGGA TCTGTTGGCTATATTCCTCCAGAATATGGACAGAGTAATGAAGTATCAGTTAGAGGAGACGTATACAGCTTCGGTATCATGCTGCTGGAATTGATAACAA GGCAAAGACCAACAGGAGAAATGTTCACAGACGGGCTTGATCTAAGGAAGTGGGTGGGTGCGGCAACCCCTCATCATATTTTGGATGTGGTAGACATGTC ATTGAAGCGAGAGGCACATTCAAGTGGTGCTATAGAGAAGCTAAAGCAATGCTGTGTTCATGTGGTCGATGCAGGAATGATGTGCACAGAAGAGAATCCA CAAAGCCGTCCTTCCATATCTTTGATCTCCAGAGAGCTCCAAAACCTTTGGAAACAGATGGAATTTGGGAAATGA
AA sequence Show only first row Show all	>Potri.005G030800.1 pacid=42802974 polypeptide=Potri.005G030800.1.p locus=Potri.005G030800 ID=Potri.005G030800.1.v4.1 annot-version=v4.1 MAHNQNCNMAVPVFCLIFFLMPGASAFVCNFTDCEALLKFKAGITSDPEGYVKDWNEANPFCNWTGVTCHQSLQNRVIDLEITDMRLEGSISPFLSNLSL LTKLSLQGNNFHGEIPTTLGALSQLEYLNMSENKLSGALPASLHGCQILKFLDLTDNNLSGVIPEELGWMKKLSFLALSENNLTGVIPAFLSNLTELTQL ELAVNYFTGQIPVELGVLSRLEILYLHLNFLEGTIPASLSNCTALQAISLIENRLSGEIPSQMGNKLQNLRKLYFMNNNISGRIPVTFSNLSQITLLDLS VNYLEGEVPEELGKLKNLEILYLHSNNLVSNSSLSFLTALTNCSFLMKLHLGSCLFSGSLPASIGNLSKDLYYFNLLNNRIRGEIPDSIGNLSGLVTLQL WYNHLDGTIPATFGKLKLLQRLYLGRNKLQGSIPDEMGQTENLGLLDLANNSITGSIPCSLGNLSQLRYLYLSQNSLSGNIPIKLSQCSLMMQLDLSFNS LQGPLPPEIGVFSNLGLSLNLSNNNLDGEIPATIGNLVSVQAIDLSVNRFSGIIPSSVGSCTALEYLNLSKNMIQGTILESLKQIASLKALDLAFNQLTG SVPIWLANDSVMKNFNLSYNRLTGEVSSMGRFKNLSGSTLIGNAGLCGGSALMRLQPCAVHKKRRKLWKWTYYLLAITVSCFLLLLVYVGVRVRRFFKKK TDAKSEEAILMAFRGRNFTQRELEIATDGFSDANLLGRGSFGSVYKAWIDDRISFVAVKVLNEDSRRCYKSLKRECQILSGIKHRNLVQMMGSIWNSQFK ALILEFVGNGNLEQHLYPESEGGNCRLTLSERLGIAIDIANALEYLQLGCSTQVVHCDLKPQNVLLDDDMVAHVADFGIGKVFFADKPTEYSSTASGLRG SVGYIPPEYGQSNEVSVRGDVYSFGIMLLELITRQRPTGEMFTDGLDLRKWVGAATPHHILDVVDMSLKREAHSSGAIEKLKQCCVHVVDAGMMCTEENP QSRPSISLISRELQNLWKQMEFGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.005G030800 [exp]	0	1	RGA.58
AT5G20480		EFR	EF-TU receptor (.1)		Potri.005G031700 [exp]	1.00	0.8130
AT1G55180		PLDALPHA4, PLDE...	phospholipase D alpha 4 (.1)		Potri.003G037700 [exp]	2.00	0.7899	PLDEPSILON.1
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Potri.009G148800 [exp]	6.00	0.7528
AT5G18980			ARM repeat superfamily protein...		Potri.008G200500 [exp]	8.66	0.7146
AT2G39690			Protein of unknown function, D...		Potri.010G202900 [exp]	12.32	0.6857
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Potri.008G104700 [exp]	13.49	0.6533
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Potri.004G188100 [exp]	16.24	0.6673
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Potri.006G167200 [exp]	17.60	0.6794	PSC450.2
AT1G01900		SBTI1.1, ATSBT1...	subtilase family protein (.1)		Potri.014G074600 [exp]	19.89	0.6122
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.009G060800 [exp]	29.79	0.6094	CESA4.5

Compare expression of checked genes

Potri.005G030800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.