Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 575 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 556 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 548 / 7e-179 EFR EF-TU receptor (.1) AT3G47580 540 / 6e-176 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 532 / 1e-172 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 489 / 1e-154 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G24130 483 / 1e-154 Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 440 / 9e-137 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G63930 427 / 4e-132 Leucine-rich repeat protein kinase family protein (.1) AT5G44700 430 / 6e-132 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G030800 [exp] 1861 / 0 AT3G47570 576 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G020900 [exp] 1575 / 0 AT3G47570 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G031700 [exp] 1323 / 0 AT5G20480 368 / 3e-113 EF-TU receptor (.1) Potri.011G102800 [exp] 615 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 608 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G020000 [exp] 606 / 0 AT3G47570 816 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 603 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 601 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 599 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033330 [exp] 608 / 0 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 601 / 0 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004827 [exp] 587 / 0 AT3G47570 812 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 572 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 568 / 0 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 566 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 564 / 0 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 562 / 0 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043368 [exp] 558 / 0 AT3G47570 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 558 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G031300.1 pacid=42805533 polypeptide=Potri.005G031300.1.p locus=Potri.005G031300 ID=Potri.005G031300.1.v4.1 annot-version=v4.1 ATGGCACACAATCAAAACTGCAACATGGCTGTGCCAGTGTTCTGTCTCATCTTTTTTCTCATGCCAGGAGCATCGGCATTTGTTTGCAATTTTACTGATT GTGAAGCTCTTCTCAAATTCAAGGCAGGCATAACAAGTGATCCGGAAGGATACGTCAAGGATTGGAATGAAGCCAATCCTTTCTGTAACTGGACCGGAGT TACATGCCACCAATCTCTCCAAAACCGGGTTATAGATCTTGAGATCATAGACATGCGCTTAGAAGGAAGTATATCGCCATTTCTATCCAATCTTTCTCTT CTCACCAAGCTTTCCTTGCAGGGTAATAATTTCCGTGAAGAAATCCCAACTACCTTGGGAGCTCTCTCACGGTTAGAATATCTGAATATGAATGAAAATC AGCTCTCTGGTGCCTTTCCAGCTTCACTACATGGCTGTCAAAGCTTGAAATTTCTAGACTTGTCTGTTAACAACCTATCTGGGGTCATTCCTGAAGAACT AGGATGGATGAAGAAGCTGAGTTTTTTAGCTCTCTCTGTAAACAACCTCACTGGGGTCATTCCGGCCTTTTTGTCAAACCTGACAGAATTGACACAGCTA CAACTGGCTGTGAACTACTTTACTGGGCAAATCCCTGTGGAGCTTGGAGTTTTGAGCAGGCTTGAGATTTTGTATTTGCACACGAACTTTCTTGAGGGAA CAATACCTGAATCACTAAGTAATTGCACTGCATTGCGAGCAATTTCATTGATTGGGAATCGATTATCCGGGGAAATCCCTTCAGAAATGGGGAACAAGCT CCAAAACTTGCGGATGTTGAATTTTTATGGCAACAATATTTCTGGTAGGATTCCAGTGACATTCTCAAATCTTTCACAGATAACACTGCTTGATTTGAGT ATCAATTACTTGGAGGGTGAAGTTCCCGAGGAACTGGGGAAGTTGAAGAACCTTGAGATTCTTTACCTCCATAGCAACAACCTGGTTAGCAATTCTTCTC TCAGTTTTCTTACTGCTCTCACAAACTGTTCATTTATGAAGAAACTGCACTTGGGCTCCTGTTTATTTTCGGGGAGTTTACCTGCTTCCATTGGAAATCT TTCCAAAGACCTCTACTATTTCAATCTTTTGAATAACCGTATAAGAGGAGAGATTCCAGATAGTATTGGAAACTTGAGTGGCCTCGTGACCCTACAACTG TGGTACAATCACCTGGACGGGACAATTCCAGCAACTTTTGGAAAGCTGAAGCTGTTGCAAAGACTATATTTGGGGAGAAACAAGCTACAAGGTTCCATTC CAGATGAAATGGGGCAGATGGAAAACCTTGGCTTACTTGATCTTGCCAATAATTCCATAACCGGGTCAATCCCTAGTTCACTTGGTAACCTCTCACAGTT GAGATACCTTTACCTATCTCAGAACAGCTTATCAGGAAATATTCCCATCAAACTCAGCCAGTGCTCTCTCATGATGCAGCTGGATTTATCTTTTAACAGC TTGCAGGGGCCTCTTCCACCAGAAATTGGAGTTTTTGCTAACTTGGGGCTGTCCCTCAACCTTTCAAATAACAATCTAGACGGGGAAATTCCAGCAACTA TTGGAAATCTGGTATCTGTACAAGCTATTGACTTATCGGTGAACAGATTTTCTGGCATTATACCAAGTTCAGTTGGAAGTTGTACGGCTTTGGAGTACTT GAACCTATCCAAGAACATGATTCAAGGTACAATTCCAGAGTCATTGAAACAAATTGCATATTTAAAAGTACTGGATTTGGCTTTTAATCAATTAACAGGC AGCGTTCCAATCTGGCTAGCCAATGACTCAGTGATGAAGAATTTCAACCTGTCGTATAATAGATTAACTGGAGAAGTTTCAAGTATGGGAAAGTTTAAAA ATCTTAGTGGAAGCACATTGATAGGAAATGCAGGCCTGTGTGGTGGTTCTGCGCTAACGGGACTCCAGCCATGTGCAGTTCAAAAGAAAAGGAGGAAGTT ATGGAAATGGACCTATTACTTGTTCGCAATTACTATTAGCTGCTTTTTACTGCTCTTGGTATATGTCGTGGTCCGTGTTAGACGATTCTTTAAAAAGAAA ACTGATGCAGAATCTGAAGAGGCAATTCTGATGGCTTTCAGAGGACGAAATTTCACTCAAAGAGAGCTCGAAATTGCAACGGACGGGTTCAGTGATGCCA AACTCTTGGGGAGAGGAAGCTTTGGGTCAGTTTATAAAGCTTGGATTGATGATAGAATATCTTTTGTCGCGGTTAAGGTTCTAAATGAAGACAGCAGGCG GTGTTACAAAAGCCTAAAAAGGGAGTGCCAAATACTGTCAGGAATTAAGCATCGGAATCTGGTTCATATGATGGGATCAATCTGGAATTCACAGTTCAAG GCTCTCATCCTTGAGTTTGTAGGTAATGGAAACTTGGAACAGCATCTTTATCCTGAGTCCGAGGGAGGAAACTGTCGATTGACGTTGAGTGAAAGATTAG GAATAGCAATAGATATTGCAAATGCCTTGGAGTATCTTCAATTGGGTTGCTCAACTCAAGTTGTGCACTGTGATCTGAAACCACAAAATGTTCTTATTGA TGATGATATGGTGGCCCGTGTTGCGGACTTTGGAATTGGAAAGGTCTTTTTTGCTGATAAACCAGCTGAATATTCTTCTACAGCAAGTGGCCTGCGAGGA TCTGTTGGCTATATCCCTCCAGAATATGGACAGAGTAATGAAGTATCAGTTAGAGGAGACGTATACAGCTTCGGTATCATGCTGCTGGAATTGATAACAA GGCAAAGACCAACAGGAGAAATGTTCACAGACGGGCTTGATCTAAGGAAGTGGGTGGGTGCCGCAACCCCTCATCATATTTTGGATGTGGTAGACATGTC ATTGAAGCGAGAGGCACATTCAAGTGGTGCAATAGAGAAGCTAAAGCAATGCTGTGTTCATGTGGTCGATGCAGGAATGATGTGCACAGAAGAGAATCCA CAAAGCCGTCCTTCCATATCTTTGATCTCCAGAGAGCTCCAAAACCTTTGGAAACAGATGGAATTTGGGAAATGA
AA sequence Show only first row Show all	>Potri.005G031300.1 pacid=42805533 polypeptide=Potri.005G031300.1.p locus=Potri.005G031300 ID=Potri.005G031300.1.v4.1 annot-version=v4.1 MAHNQNCNMAVPVFCLIFFLMPGASAFVCNFTDCEALLKFKAGITSDPEGYVKDWNEANPFCNWTGVTCHQSLQNRVIDLEIIDMRLEGSISPFLSNLSL LTKLSLQGNNFREEIPTTLGALSRLEYLNMNENQLSGAFPASLHGCQSLKFLDLSVNNLSGVIPEELGWMKKLSFLALSVNNLTGVIPAFLSNLTELTQL QLAVNYFTGQIPVELGVLSRLEILYLHTNFLEGTIPESLSNCTALRAISLIGNRLSGEIPSEMGNKLQNLRMLNFYGNNISGRIPVTFSNLSQITLLDLS INYLEGEVPEELGKLKNLEILYLHSNNLVSNSSLSFLTALTNCSFMKKLHLGSCLFSGSLPASIGNLSKDLYYFNLLNNRIRGEIPDSIGNLSGLVTLQL WYNHLDGTIPATFGKLKLLQRLYLGRNKLQGSIPDEMGQMENLGLLDLANNSITGSIPSSLGNLSQLRYLYLSQNSLSGNIPIKLSQCSLMMQLDLSFNS LQGPLPPEIGVFANLGLSLNLSNNNLDGEIPATIGNLVSVQAIDLSVNRFSGIIPSSVGSCTALEYLNLSKNMIQGTIPESLKQIAYLKVLDLAFNQLTG SVPIWLANDSVMKNFNLSYNRLTGEVSSMGKFKNLSGSTLIGNAGLCGGSALTGLQPCAVQKKRRKLWKWTYYLFAITISCFLLLLVYVVVRVRRFFKKK TDAESEEAILMAFRGRNFTQRELEIATDGFSDAKLLGRGSFGSVYKAWIDDRISFVAVKVLNEDSRRCYKSLKRECQILSGIKHRNLVHMMGSIWNSQFK ALILEFVGNGNLEQHLYPESEGGNCRLTLSERLGIAIDIANALEYLQLGCSTQVVHCDLKPQNVLIDDDMVARVADFGIGKVFFADKPAEYSSTASGLRG SVGYIPPEYGQSNEVSVRGDVYSFGIMLLELITRQRPTGEMFTDGLDLRKWVGAATPHHILDVVDMSLKREAHSSGAIEKLKQCCVHVVDAGMMCTEENP QSRPSISLISRELQNLWKQMEFGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.005G031300 [exp]	0	1
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.017G074000 [exp]	1.41	0.9069
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038200 [exp]	1.73	0.9079
AT2G37730			Protein of unknown function (D...		Potri.016G101200 [exp]	2.00	0.8755
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038100 [exp]	2.44	0.8978
AT1G67360			Rubber elongation factor prote...		Potri.003G173100 [exp]	4.79	0.8106
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Potri.014G006800 [exp]	7.00	0.8527
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038000 [exp]	7.34	0.8527
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.001G049100 [exp]	8.48	0.8458
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025500 [exp]	8.94	0.8377
					Potri.001G410554 [exp]	11.61	0.8452

Compare expression of checked genes

Potri.005G031300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.