Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27550 379 / 5e-124 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G22610 254 / 5e-75 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G72250 243 / 1e-70 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G41310 180 / 6e-49 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G09170 165 / 9e-44 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT2G47500 164 / 1e-43 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G73860 155 / 1e-40 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G27000 154 / 6e-40 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT3G44730 149 / 2e-38 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT3G10310 149 / 2e-38 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G030271 [exp] 521 / 3e-179 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G020700 [exp] 465 / 2e-157 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G140000 [exp] 253 / 4e-74 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.001G436200 [exp] 249 / 1e-72 AT1G72250 1248 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.002G110600 [exp] 238 / 3e-69 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.005G031850 [exp] 184 / 4e-56 AT5G27550 227 / 2e-70 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G031300 [exp] 172 / 2e-46 AT3G47570 574 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G030800 [exp] 170 / 1e-45 AT3G47570 576 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G030519 [exp] 154 / 2e-45 AT2G24130 59 / 7e-11 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004487 [exp] 365 / 2e-118 AT5G27550 881 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029914 [exp] 358 / 5e-116 AT5G27550 905 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035954 [exp] 258 / 2e-76 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10005582 [exp] 248 / 2e-72 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10013714 [exp] 246 / 1e-71 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10025708 [exp] 237 / 8e-69 AT2G22610 1238 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10002007 [exp] 167 / 1e-44 AT1G63640 941 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10032264 [exp] 164 / 3e-43 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10024628 [exp] 160 / 3e-42 AT1G63640 980 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10029865 [exp] 160 / 3e-42 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G031500.2 pacid=42805469 polypeptide=Potri.005G031583.1.p locus=Potri.005G031500 ID=Potri.005G031500.2.v4.1 annot-version=v4.1 ATGGTTTCGCTCGTTGACACTGGAGAAACTATTAATTCGGAGGAGGAGAGCGTATCTAATAGAATTCGACAAGTTTCCCCATCTCAGGGTCCAAGACTGC CCATTTTGCAGAAAATTATCAATTTAAGTGATAAAATTCAGAATTTGAAGAAAGAACACTCAAATCTCTCTAATCAAGTAAAGACTGCCAAGGATTCCTT TCTTGGCCCCAATATTTTAGACACCCTTCAAAAACTCGGTAATGAATATGAACTTCTTAAAAAGAAGTATCTACAAGAGTTGTCTGAGAGGAAGAGGCTT TACAATGAGGTGATTGAGCTTAAAGGGAATATTAGGGTCTTCTGTAGATGCAGACCACTAAATCAAGTCGAAATAACAAATGGTTCGAACTATGTAGTTG AATTTGACTCTTCCCAAGATAATGAGTTGCAGATCATTTCCTCTGATTCTTCCAAAAAGCAATTTAAGTTCGACCATGTTTTTGGGCCTGAGGATAATCA AGAGGCTGTTTTTGCACAAACTAAACCAATAGTCGCTTCAGTTTTGGATGGCTACAATGTCTGCATATTCGAATATGGACAAACTGGAACTGGAAAGACG TTTGCTATGGAGGGCAGCCCAGAAAATAGGGGAGTGAACTACAGAACATTGGATGAGTTGTTCTCAAGAGAGAAGTGGCATTATGAGATATGGTCCTTTT TGTTGGAGATAAAACAAACAGCTGAAGGAACACAAGAAGTCCCAGGACTTGTTGAAACTCGGGTGACTGGCACAGAGGATGTGTGGGATTTACTCAAGTC TGGAAGTCGGGCCAGGTCTCTTGGATCAACCAGCGCTAATGAGCTTAGCAGCCGTTCTCATCGTTTGTTGCGAGTAACAGTGAAAGGAGTGAATTTAATA GATGGACAAAAGACAAGAAGTCACCTATGGATGGTCGATTTGGCTGGTAGCGAACGTGTGGGAAAGATTGATGTTGAAGACCTCTACTATTTCAATCTTT TGAACAACCGTATAAGAGGAGAGATTCCAGATAGTATTGGAAACTTGAGTGTTGGCCTCGCGACCCTACAACTGCCGTACAATCACTTGGACGGGACAAT TCCAGCAACTTTTGGAAAGCTGAAGCTGTTGCAAAGACTATATTTGGGGAGAAACAAGCTCCAAGGTTCCATTCCAGATGAAATGGGGCAGATGGAAAAC CTTGGCTTACTTGATCTTGCCAATAATTCCATAACCGGGTCAATCCTTCACTTGCTTTCTTCTTTAATGAAGCCTTTATCTTCAGCTTTCTTCCTAATGA AGCCTTTATCTATCAAAATTGAACCGCCAAACTTTGCAACATTGTCCATGTTGATCCTCAAACCTCCGATTTGTTCAGTCTTAACAAAAGCTGTAAATTA G
AA sequence Show only first row Show all	>Potri.005G031500.2 pacid=42805469 polypeptide=Potri.005G031583.1.p locus=Potri.005G031500 ID=Potri.005G031500.2.v4.1 annot-version=v4.1 MVSLVDTGETINSEEESVSNRIRQVSPSQGPRLPILQKIINLSDKIQNLKKEHSNLSNQVKTAKDSFLGPNILDTLQKLGNEYELLKKKYLQELSERKRL YNEVIELKGNIRVFCRCRPLNQVEITNGSNYVVEFDSSQDNELQIISSDSSKKQFKFDHVFGPEDNQEAVFAQTKPIVASVLDGYNVCIFEYGQTGTGKT FAMEGSPENRGVNYRTLDELFSREKWHYEIWSFLLEIKQTAEGTQEVPGLVETRVTGTEDVWDLLKSGSRARSLGSTSANELSSRSHRLLRVTVKGVNLI DGQKTRSHLWMVDLAGSERVGKIDVEDLYYFNLLNNRIRGEIPDSIGNLSVGLATLQLPYNHLDGTIPATFGKLKLLQRLYLGRNKLQGSIPDEMGQMEN LGLLDLANNSITGSILHLLSSLMKPLSSAFFLMKPLSIKIEPPNFATLSMLILKPPICSVLTKAVN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27550			P-loop containing nucleoside t...		Potri.005G031500 [exp]	0	1
AT1G69550			disease resistance protein (TI...		Potri.005G031899 [exp]	1.41	0.9705
AT5G27550			P-loop containing nucleoside t...		Potri.005G031850 [exp]	2.00	0.9179
AT1G69550			disease resistance protein (TI...		Potri.005G030318 [exp]	3.16	0.9390
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.005G030413 [exp]	3.87	0.9335
AT5G57990		UBP23	ubiquitin-specific protease 23...		Potri.018G107500 [exp]	5.09	0.8374
AT1G69550			disease resistance protein (TI...		Potri.005G030700 [exp]	6.32	0.8893
AT3G12970			unknown protein		Potri.005G098300 [exp]	6.70	0.8574
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.005G032000 [exp]	8.77	0.8417
AT4G31980			unknown protein		Potri.003G209000 [exp]	8.94	0.8580
AT5G17680			disease resistance protein (TI...		Potri.005G031101 [exp]	10.24	0.8684

Compare expression of checked genes

Potri.005G031500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.