Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20480 368 / 3e-113 EFR EF-TU receptor (.1) AT3G47570 336 / 9e-102 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 330 / 2e-99 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 322 / 2e-96 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 320 / 2e-95 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 301 / 7e-88 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 282 / 2e-81 Leucine-rich repeat protein kinase family protein (.1) AT5G48940 277 / 1e-79 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G17230 266 / 6e-76 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 266 / 7e-76 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G030800 [exp] 1288 / 0 AT3G47570 576 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G031300 [exp] 1258 / 0 AT3G47570 574 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G020900 [exp] 1100 / 0 AT3G47570 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G030626 [exp] 394 / 1e-132 AT2G24130 122 / 3e-31 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G133100 [exp] 391 / 6e-122 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G020000 [exp] 389 / 4e-121 AT3G47570 816 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044500 [exp] 384 / 3e-119 AT3G47570 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 379 / 1e-117 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 375 / 9e-116 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033330 [exp] 404 / 7e-127 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 395 / 1e-123 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 388 / 9e-121 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 385 / 7e-120 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 384 / 3e-119 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 380 / 1e-117 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 368 / 2e-113 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030851 [exp] 362 / 5e-112 AT3G47570 748 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 364 / 7e-112 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031043 [exp] 361 / 2e-110 AT3G47570 756 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G031700.2 pacid=42802318 polypeptide=Potri.005G031700.2.p locus=Potri.005G031700 ID=Potri.005G031700.2.v4.1 annot-version=v4.1 ATGGCACACAATCAAAACTGCAACATGGCTGTGCCAGTGTTCTGTCTCATCTTTTTTCTCATGCCAGGAGCATCGGCATTTGTTTGCAATTTTACTGATT GTGAAGCTCTTCTCAAATTCAAGGGAGGCATAACAAGTGATCCGAAAGGATACGTCCAGGATTGGAATGAAGCCAATCCTTTCTGCAACTGGACCGGAAT TACATGCCACCAATATCTCCAAAACCGGGTTATAGATCTTGAGATCATAGAAATGCGCTTAGAAGGAAGTATGTCGCCATTTCTATCCAATCTTTCTCTT CTCACCAAGCTTTCCTTGCAGGGTAATAATTTCCGTGGAGAAATCCCAACTACCTTGGGGGCTCTCTCACAGTTGGAATATCTGAATATGAAGGAAAATA AGCTCTCTGGTGCCTTTCCAGCTTCACTACATGGCTGTCAAAGCTTGAAATTTCTAGACTTGTCTGTGAACAACCTATCTGGGGTCATTCCTGAAGAACT AGGATGGATGAAGAAGCTGAGTTTTTTAGCTCTCTCTGTAAACAACCTCACTGGGGTCATTCCGGCCTTCTTGTCAAACCTGACAGAATTGACACAGCTA GAACGGGCTGTGAACTACTTTACTGGGCAAATCCCAGTGGAGCTTGGAGTTTTGAGCAGGCTTGAGACTTTGTTTTTGCACCTAAACTTTCTTGAGGGAA CAATACCTGCATCACTAAGTAATTGCACTGCATTGCGAGAAATTTCATTGATTGAGAATCTTTTATCCGGGGAAATCCCTTCAGAAATGGGGAACAAGCT CCAAAACTTGCAGAAGTTGTATTTTTTAAACAACAACATTTCTGGTAGGATTCCAGTGACATTCTCAAATCTTTCACAAATAACTCTGCTTGATTTGAGT GTCAATTACTTGGAGGGTGAAGTTCCCGAGGAACTGGGGAAGTTGAAGAACCTTGAGATCCTTTACCTCCATAGCAACAACCTGGTTAGCAATTCTTCTC TTAGTTTTCTTACTGCTCTCACAAACTGTTCATTTCTGAAGAAACTGCACTTGGGCTCCTGTTTATTTTCTGGGAGTTTACCTGCTTCCATTGGAAATCT TTCCAAAGACCTCTACTATTCCAATCTTTTGAATAACCGTATAAGAGGAGAGATTCCAGATAGTATTGGAAACTTGAGTGGCCTCGTGAACCTACAACTG TGGTACAATCACCTGGACGGGACAATTCCAGCAACTTTTGGAAAGCTGAAGCTGTTGCAAAGACTATATTTGGGGAGAAACAAGCTCCAAGGTTCCATTC CAGATGAAATGGGGCAGAAGGAAAACCTTGGCTTACTTGATCTTGGCAATAATTCCTTAACCGGTTCAATCCCTTGTTCACTTGGTAACCTCTCACAGTT GAGATACCTTTACCTATCTCGGAACAGCTTATCAGGAAATATTCCCATCAAACTCAGCCAGTGCTCTCTCATGATGCAGCTGGATTTATCTTTTAACAAC TTGCAGGGGCCTCTTCCACCAGAAATTGGAGTTTTTTCTAACTTGGGGCTCTCCGTCAACCTTTCAAATAACAATCTAGACGGGGAAATACCTGCAACTA TTGGAAATCTGGTATCTGTACAAGCTATTGACTTATCGGTGAACAGATTTTCTGGCATTATACCAAGTTCAGTTGGAAGTTGTACAGCTTTGGAGTACTT GAACCTATCCAAGAACATGATTCAAGGTACAATTCCAGAGTCATTGAAACAAATTGCATATTTAAAAGCACTGGATCTGGCTTTTAATCAATTAACAGGC AGCGTTCCAATCTGGCTTGCCAATGACTCAGTGATGAAAAATTTCAACCTGTCGTATAATAGATTAACTGGAGAATTTTCAAGTATGGGAAGGTTTAAAA ATCTTAGTGGAAGCACATTGATAGGAAATGCAGGCCTGTGTGGTGGTTCTGCGCTAATGAGACTCCAGCCATGTGCAGTTCAAAAGAAAAGGAGGAAGTT ATGGAAATGGACCTATTACTTGTTGGCAATTACTGCTAGCTGCTTTTTACTGCTCTTGGTATATGTCGGGGTCCGTGTTAGACAATTCTTTAAAAAGAAA ACTGATGCAACATCTGAAGAAGCAATTCTGATGGCTTTCAGAGGACGAAATTTCACTCAAAGAGAGCTCGAAATTGCAACCGACGGGTTCAGTGATGCCA ATCTCTTGGGGAGAGGAAGCTTTGGATCTGTTTATAAAGCTTGGATTGATGATAGAATATCTTTTGTCGCGGTTAAGGTTCTAAATGAAGACAGCAGGCG GTGTTATCCTGGAATCTGGTTCAAATGA
AA sequence Show only first row Show all	>Potri.005G031700.2 pacid=42802318 polypeptide=Potri.005G031700.2.p locus=Potri.005G031700 ID=Potri.005G031700.2.v4.1 annot-version=v4.1 MAHNQNCNMAVPVFCLIFFLMPGASAFVCNFTDCEALLKFKGGITSDPKGYVQDWNEANPFCNWTGITCHQYLQNRVIDLEIIEMRLEGSMSPFLSNLSL LTKLSLQGNNFRGEIPTTLGALSQLEYLNMKENKLSGAFPASLHGCQSLKFLDLSVNNLSGVIPEELGWMKKLSFLALSVNNLTGVIPAFLSNLTELTQL ERAVNYFTGQIPVELGVLSRLETLFLHLNFLEGTIPASLSNCTALREISLIENLLSGEIPSEMGNKLQNLQKLYFLNNNISGRIPVTFSNLSQITLLDLS VNYLEGEVPEELGKLKNLEILYLHSNNLVSNSSLSFLTALTNCSFLKKLHLGSCLFSGSLPASIGNLSKDLYYSNLLNNRIRGEIPDSIGNLSGLVNLQL WYNHLDGTIPATFGKLKLLQRLYLGRNKLQGSIPDEMGQKENLGLLDLGNNSLTGSIPCSLGNLSQLRYLYLSRNSLSGNIPIKLSQCSLMMQLDLSFNN LQGPLPPEIGVFSNLGLSVNLSNNNLDGEIPATIGNLVSVQAIDLSVNRFSGIIPSSVGSCTALEYLNLSKNMIQGTIPESLKQIAYLKALDLAFNQLTG SVPIWLANDSVMKNFNLSYNRLTGEFSSMGRFKNLSGSTLIGNAGLCGGSALMRLQPCAVQKKRRKLWKWTYYLLAITASCFLLLLVYVGVRVRQFFKKK TDATSEEAILMAFRGRNFTQRELEIATDGFSDANLLGRGSFGSVYKAWIDDRISFVAVKVLNEDSRRCYPGIWFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20480		EFR	EF-TU receptor (.1)		Potri.005G031700 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Potri.005G030800 [exp]	1.00	0.8130	RGA.58
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120700 [exp]	4.47	0.7255
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Potri.006G065900 [exp]	5.29	0.6644	Pt-CBP1.3
AT2G44300			Bifunctional inhibitor/lipid-t...		Potri.001G232000 [exp]	7.74	0.6994
AT5G13250			RING finger protein (.1)		Potri.001G062700 [exp]	10.24	0.6872
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Potri.013G052500 [exp]	14.42	0.6028
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Potri.009G148800 [exp]	14.89	0.6977
AT5G62350			Plant invertase/pectin methyle...		Potri.015G128700 [exp]	16.73	0.7110
AT1G66920			Protein kinase superfamily pro...		Potri.010G118300 [exp]	17.20	0.6726
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Potri.004G188100 [exp]	18.02	0.6659

Compare expression of checked genes

Potri.005G031700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.